View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18061_low_33 (Length: 237)

Name: NF18061_low_33
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18061_low_33
NF18061_low_33
[»] chr2 (7 HSPs)
chr2 (1-221)||(42039028-42039248)
chr2 (184-221)||(4562782-4562819)
chr2 (184-221)||(5521250-5521287)
chr2 (184-221)||(18278447-18278484)
chr2 (184-221)||(20296421-20296458)
chr2 (185-217)||(32901382-32901414)
chr2 (181-221)||(37352523-37352563)
[»] chr8 (9 HSPs)
chr8 (176-221)||(23435263-23435308)
chr8 (184-221)||(133418-133455)
chr8 (184-221)||(2792782-2792819)
chr8 (184-221)||(10573104-10573141)
chr8 (184-221)||(26567278-26567315)
chr8 (184-221)||(43186856-43186893)
chr8 (184-221)||(43283996-43284033)
chr8 (184-220)||(10568088-10568124)
chr8 (185-221)||(22274641-22274677)
[»] chr1 (9 HSPs)
chr1 (97-174)||(41625526-41625603)
chr1 (174-221)||(40520823-40520870)
chr1 (184-221)||(13773171-13773208)
chr1 (184-221)||(18551663-18551700)
chr1 (184-221)||(43884797-43884834)
chr1 (184-221)||(52369600-52369637)
chr1 (184-221)||(52426943-52426980)
chr1 (185-221)||(2846740-2846776)
chr1 (185-221)||(42848761-42848797)
[»] chr4 (12 HSPs)
chr4 (96-144)||(6122141-6122189)
chr4 (178-221)||(46582631-46582674)
chr4 (183-221)||(627012-627050)
chr4 (184-221)||(2771039-2771076)
chr4 (184-221)||(4234315-4234352)
chr4 (184-221)||(4590249-4590286)
chr4 (184-221)||(7272520-7272557)
chr4 (184-221)||(9661553-9661590)
chr4 (184-221)||(11375919-11375956)
chr4 (184-221)||(37310030-37310067)
chr4 (184-221)||(39697892-39697929)
chr4 (185-221)||(46903335-46903371)
[»] chr3 (6 HSPs)
chr3 (181-221)||(54021364-54021404)
chr3 (178-221)||(48251569-48251612)
chr3 (184-221)||(18194341-18194378)
chr3 (184-221)||(25938960-25938997)
chr3 (184-221)||(39719938-39719975)
chr3 (184-221)||(49750436-49750473)
[»] chr5 (6 HSPs)
chr5 (98-157)||(1995141-1995200)
chr5 (95-154)||(6287220-6287279)
chr5 (183-221)||(4238338-4238376)
chr5 (183-221)||(22228992-22229030)
chr5 (184-221)||(40361609-40361646)
chr5 (184-221)||(42525403-42525440)
[»] chr7 (3 HSPs)
chr7 (184-221)||(3392470-3392507)
chr7 (184-221)||(21066889-21066926)
chr7 (184-221)||(30806118-30806155)
[»] chr6 (1 HSPs)
chr6 (184-221)||(29284269-29284306)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42039028 - 42039248
Alignment:
Q  1 tttcttctccataaaataatactatacgaaccgttaaaatttgaccaagttgtgcacagataagataaatctcgtaatgtatgaaattgtttctatcatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  42039028 tttcttctccataaaataatactatacgaaccgttaaaatttgaccaagttgtgcacagataagataaatcttgtaatgtatgaaattgtttttatcatt 42039127  T
Q  101 atatcaataaattttacagttaaatcaaatgaaatatgataaaatttattgattcaatgatagaaaatagacttttaatccatgtgagtttagctcagtt 200  Q
    | ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42039128 agatcaataaattttaccgttaaatcaaatgaaacatgataaaatttattgattcaatgatagaaaatagacttttaatccatgtgagtttagctcagtt 42039227  T
Q  201 gatatggatattgcatattat 221  Q
    |||||||||| ||||||||||    
T  42039228 gatatggatagtgcatattat 42039248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 4562819 - 4562782
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  4562819 gtgagtttagctcagttggtagggatattgcatattat 4562782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 5521287 - 5521250
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  5521287 gtgagcttagctcagttgatagggatattgcatattat 5521250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 18278484 - 18278447
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  18278484 gtgagtttagctcagttggtagggatattgcatattat 18278447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 20296421 - 20296458
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  20296421 gtgagcttagctcagttgataaggatattgcatattat 20296458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 32901382 - 32901414
Alignment:
Q  185 tgagtttagctcagttgatatggatattgcata 217  Q
    |||||||||||||||||||||||||| ||||||    
T  32901382 tgagtttagctcagttgatatggataatgcata 32901414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 37352563 - 37352523
Alignment:
Q  181 catgtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||| |||||||| || ||||||||||||||||    
T  37352563 catgtgagtttaactcagttggtagggatattgcatattat 37352523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 23435308 - 23435263
Alignment:
Q  176 taatccatgtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||||    
T  23435308 taatccctgtgagcttagctcagttgatagggatattgcatattat 23435263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 133418 - 133455
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  133418 gtgagcttagctcagttgatagggatattgcatattat 133455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 2792782 - 2792819
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  2792782 gtgagcttagctcagttgatagggatattgcatattat 2792819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 10573104 - 10573141
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  10573104 gtgagtttagctcagttggtagggatattgcatattat 10573141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 26567315 - 26567278
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  26567315 gtgagcttagctcagttgatagggatattgcatattat 26567278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 43186856 - 43186893
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  43186856 gtgagtttagctcagttggtagggatattgcatattat 43186893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 43284033 - 43283996
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  43284033 gtgagtttagctcagttggtagggatattgcatattat 43283996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 10568088 - 10568124
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatatta 220  Q
    |||||||||||||||||| || |||||||||||||||    
T  10568088 gtgagtttagctcagttggtagggatattgcatatta 10568124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 22274677 - 22274641
Alignment:
Q  185 tgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||||||||||||||| || ||||||||||||||||    
T  22274677 tgagtttagctcagttggtagggatattgcatattat 22274641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 41625526 - 41625603
Alignment:
Q  97 cattatatcaataaattttacagttaaatcaaatgaaatatgataaaatttattgattcaatgatagaaaatagactt 174  Q
    ||||| |||||||||||| ||  |||||| |||| ||||||||| | ||| |||||| ||||| ||||||||||||||    
T  41625526 cattagatcaataaatttcactattaaattaaataaaatatgatgagattcattgatccaatggtagaaaatagactt 41625603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 40520823 - 40520870
Alignment:
Q  174 tttaatccatgtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||||||  |||||||||||||||||| || ||||||||||||||||    
T  40520823 tttaatccccgtgagtttagctcagttggtagggatattgcatattat 40520870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 13773171 - 13773208
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  13773171 gtgagtttagctcagttggtagggatattgcatattat 13773208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 18551700 - 18551663
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  18551700 gtgagcttagctcagttggtatggatattgcatattat 18551663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 43884797 - 43884834
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  43884797 gtgagtttagctcagttggtagggatattgcatattat 43884834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 52369600 - 52369637
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  52369600 gtgagtttagctcagttggtagggatattgcatattat 52369637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 52426980 - 52426943
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  52426980 gtgagcttagctcagttgatagggatattgcatattat 52426943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 2846776 - 2846740
Alignment:
Q  185 tgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  2846776 tgagtttagctcagttgatagggatattgcattttat 2846740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 42848797 - 42848761
Alignment:
Q  185 tgagtttagctcagttgatatggatattgcatattat 221  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  42848797 tgagcttagctcagttgatagggatattgcatattat 42848761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 6122141 - 6122189
Alignment:
Q  96 tcattatatcaataaattttacagttaaatcaaatgaaatatgataaaa 144  Q
    |||||| |||||||||||||||  |||||| ||||||||||||||||||    
T  6122141 tcattaaatcaataaattttaccattaaattaaatgaaatatgataaaa 6122189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 46582631 - 46582674
Alignment:
Q  178 atccatgtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||| ||||||||||||||||||| || ||||||||||||||||    
T  46582631 atccctgtgagtttagctcagttggtagggatattgcatattat 46582674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 627050 - 627012
Alignment:
Q  183 tgtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  627050 tgtgagtttagctcagttggtagggatattgcatattat 627012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 2771039 - 2771076
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  2771039 gtgagcttagctcagctgatatggatattgcatattat 2771076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 4234352 - 4234315
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  4234352 gtgagcttagctcagttgatagggatattgcatattat 4234315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 4590249 - 4590286
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  4590249 gtgagtttagctcagttggtagggatattgcatattat 4590286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 7272520 - 7272557
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  7272520 gtgaatttagctcagttgataaggatattgcatattat 7272557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 9661553 - 9661590
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  9661553 gtgagtttatctcagttggtatggatattgcatattat 9661590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 11375956 - 11375919
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  11375956 gtgagcttagctcagttgatagggatattgcatattat 11375919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 37310030 - 37310067
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  37310030 gtgagtttaactcagttggtatggatattgcatattat 37310067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 39697929 - 39697892
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  39697929 gtgagcttagctcagttgatagggatattgcatattat 39697892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 46903335 - 46903371
Alignment:
Q  185 tgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  46903335 tgagtttagatcagttggtatggatattgcatattat 46903371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 54021404 - 54021364
Alignment:
Q  181 catgtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  54021404 catgtgagcttagctcagttggtatggatattgcatattat 54021364  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 48251569 - 48251612
Alignment:
Q  178 atccatgtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||    
T  48251569 atccctgtgagcttagctcagttgatagggatattgcatattat 48251612  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 18194341 - 18194378
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  18194341 gtgagtttagctcagttggtagggatattgcatattat 18194378  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 25938997 - 25938960
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  25938997 gtgagtttagctcagttggtagggatattgcatattat 25938960  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 39719938 - 39719975
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  39719938 gtgagtttagctcagttggtagggatattgcatattat 39719975  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 49750473 - 49750436
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  49750473 gtgagcttagctcagttgatagggatattgcatattat 49750436  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 1995141 - 1995200
Alignment:
Q  98 attatatcaataaattttacagttaaatcaaatgaaatatgataaaatttattgattcaa 157  Q
    |||| ||| |||||||||||| |||||| | |||||||||||||  ||||||||||||||    
T  1995141 attagatcgataaattttacaattaaattatatgaaatatgatatgatttattgattcaa 1995200  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 6287220 - 6287279
Alignment:
Q  95 atcattatatcaataaattttacagttaaatcaaatgaaatatgataaaatttattgatt 154  Q
    ||||||| ||||||||||||| | ||||||| |||||| ||||||||  |||||||||||    
T  6287220 atcattaaatcaataaattttgccgttaaattaaatgatatatgatatgatttattgatt 6287279  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 4238376 - 4238338
Alignment:
Q  183 tgtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  4238376 tgtgagtttagttcagttggtatggatattgcatattat 4238338  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 22229030 - 22228992
Alignment:
Q  183 tgtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  22229030 tgtgagtttagctcagttggtatggatattgcatgttat 22228992  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 40361646 - 40361609
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  40361646 gtgagtttagctcagttggtagggatattgcatattat 40361609  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 42525403 - 42525440
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  42525403 gtgagtttagctcagttggtagggatattgcatattat 42525440  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 3392470 - 3392507
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  3392470 gtgagcttaactcagttgatatggatattgcatattat 3392507  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 21066889 - 21066926
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  21066889 gtgagtttagctcagttggtagggatattgcatattat 21066926  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 30806118 - 30806155
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  30806118 gtgagtttagctcagttggtagggatattgcatattat 30806155  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 29284269 - 29284306
Alignment:
Q  184 gtgagtttagctcagttgatatggatattgcatattat 221  Q
    |||||||||||||||||| || ||||||||||||||||    
T  29284269 gtgagtttagctcagttggtagggatattgcatattat 29284306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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