View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_4 (Length: 563)
Name: NF18061_low_4
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_4 |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 313 - 561
Target Start/End: Original strand, 5932740 - 5932988
Alignment:
| Q |
313 |
cattagacttagcttactaaaacaaaattaaaagccaacaacttttccaaatacaaactgacacattattgaaaaataacaaaatattaaaacaggacac |
412 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5932740 |
cattagacttagcttactaaaacaaaattaaaagccagcaacttttccaaatacaaactgacacattattggaaaataacaaaatattaaaacaggacac |
5932839 |
T |
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| Q |
413 |
aaaatcatgaagaatcccataaacatgtctaattccttgaacagctgcaaacaccatcatatcaacgacgaatcatgcaaaagaagagagtcagattcat |
512 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5932840 |
aaaatcatgaagaatctcataaacatgtctaattcctcaaacaactgcaaacaccatcatatcaacgacgaatcacacaaaagaagagagtcagattcat |
5932939 |
T |
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| Q |
513 |
tcccactcctggagcaccaaccaccacacgcgcaccttccttaatcctt |
561 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5932940 |
tcccactcctggagcaccaaccaccacacacgcaccttccttaatcctt |
5932988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 166 - 315
Target Start/End: Original strand, 5931458 - 5931607
Alignment:
| Q |
166 |
gcatatataccatatacgttgaacggggttctccttgatttggctagattctgtgtcgtttaaaagaaagattattccaacagaagtagcccagaagtat |
265 |
Q |
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| T |
5931458 |
gcatatataccatatacgttgaacggggttatccttgatttggctagattctgtgtcgtttaaaagaaagattattccaacagaagtagcccagaagtat |
5931557 |
T |
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| Q |
266 |
acatgaagatggaaagagattagatttaaatgttgcatatacattatcat |
315 |
Q |
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| T |
5931558 |
acatgaagatggaaagagattagatttaaatgttgcatatacattatcat |
5931607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5931257 - 5931443
Alignment:
| Q |
1 |
acccagcttagctagcccataaaa-ataggataatttggcaagatgccgtcaacatttgtttcaaccgtaggatactttcgagcttccattatt-nnnnn |
98 |
Q |
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| T |
5931257 |
acccagcttagctagcccataaaaaataggataatttggcaagatgccgtcaacatttgtttcaaccgtaggatactttcgagcttccattattaaaaaa |
5931356 |
T |
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| Q |
99 |
nnnnggttagaagagnnnnnnntattcccaacagataattgtataagaagatagaagagataaagttgcatatataccatatacgtt |
185 |
Q |
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| T |
5931357 |
aaaaggttagaagagaaaaaaatattcccaacagataattgtataagaagatagaagagataaagttgcatatataccatatacgtt |
5931443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 473 - 561
Target Start/End: Original strand, 19253518 - 19253606
Alignment:
| Q |
473 |
atcaacgacgaatcatgcaaaagaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcaccttccttaatcctt |
561 |
Q |
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|||| |||||||| ||||||||||| ||||||| ||||| |||||||| |||||||||||||| ||||| |||||||| ||||||||| |
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| T |
19253518 |
atcatcgacgaattatgcaaaagaatagagtcaaattcagtcccactctaggagcaccaaccacaacacgtgcaccttcgttaatcctt |
19253606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 313 - 558
Target Start/End: Complemental strand, 18197262 - 18197017
Alignment:
| Q |
313 |
cattagacttagcttactaaaacaaaattaaaagccaacaacttttccaaatacaaactgacacattattgaaaaataacaaaatattaaaacaggacac |
412 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18197262 |
cattagacttaacttactaaaacaaaattaaaagccaacaacttttccaaatacaaactgacaaattattgaaaaataacaaaatattaaaacaggacac |
18197163 |
T |
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| Q |
413 |
aaaatcatgaagaatcccataaacatgtctaattccttgaacagctgcaaacaccatcatatcaacgacgaatcatgcaaaagaagagagtcagattcat |
512 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
18197162 |
aaaatcatgaagaatcccataaacatgtctaattcctcgaacagttgcaaacaccatcatatcaacgaggaatcacgcaaaagaagagagtcagattcat |
18197063 |
T |
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| Q |
513 |
tcccactcctggagcaccaaccaccacacgcgcaccttccttaatc |
558 |
Q |
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||||||| ||||||||||||||||||||| |||| |||||||||| |
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| T |
18197062 |
tcccacttctggagcaccaaccaccacacatgcacattccttaatc |
18197017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 557
Target Start/End: Original strand, 6859 - 6921
Alignment:
| Q |
495 |
gaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcaccttccttaat |
557 |
Q |
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| T |
6859 |
gaagagagtcaaattcatccccacagctggagcccctaccaccacacgagcaccttccttaat |
6921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 557
Target Start/End: Original strand, 15385883 - 15385945
Alignment:
| Q |
495 |
gaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcaccttccttaat |
557 |
Q |
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| T |
15385883 |
gaagagagtcaaattcatccccacagctggagcccctaccaccacacgagcaccttccttaat |
15385945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 556
Target Start/End: Complemental strand, 24325221 - 24325160
Alignment:
| Q |
495 |
gaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcaccttccttaa |
556 |
Q |
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||||||||||| |||||| ||||| ||||| | || ||||||||||| ||||||||||||| |
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| T |
24325221 |
gaagagagtcaaattcatccccacagctggaacccctaccaccacacgagcaccttccttaa |
24325160 |
T |
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