View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_5 (Length: 521)
Name: NF18061_low_5
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 16 - 513
Target Start/End: Original strand, 36224577 - 36225074
Alignment:
| Q |
16 |
caatctggtgagtactggcccatgattgcccacatcaaaagtgttttcattggagaaccaagtagacaggaggatgaatgaaggtaaacatatcatttcg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36224577 |
caatctggtgagtactggcccatgattgcccacatcaaaagtgttttcattggagaaccaagtagataggaggatgaatgaaggtaaacatatcatttcg |
36224676 |
T |
|
| Q |
116 |
tattaaataagtgttgactgtactggtcaaaaattaaaaatgttgattgcatctccacaacttttttcaacttcaaaatttaaagttagagcttaaaatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36224677 |
tattaaataagtgttgactgtactggtcaaaaattaaaaatgttgattgcatctccacaacttttttcaacttcaaaatttaaagttagagcttaaaatg |
36224776 |
T |
|
| Q |
216 |
gaaatttatatataatgtaatcattatgttgtatatttttaacatcacttgactggaattgactatcaactattaatttacaaaatgatttagtttatct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36224777 |
gaaatttatatataatgtaatcattatgttgtatatttttaacatcacttgactggaattgactatcaactattaatttacaaaatgatttagtttatct |
36224876 |
T |
|
| Q |
316 |
gagagtgatgtttgatttatttagtggacaagaagttatgttgaagctggaattgaaaagggatgagcaaatttgaagggacatatgcagtataagaata |
415 |
Q |
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| T |
36224877 |
gagagtgatgtttgatttatttagtggacaagaagttacgttgaagctggaattgaaaagggatgagcaaatttgaagggacatatgcagtataagaata |
36224976 |
T |
|
| Q |
416 |
ttcatgggttgatccggtccattattcaacaagattctttggatgtttccattagcaagttcgatgtagccaaataattgagaagggttattttcttc |
513 |
Q |
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| T |
36224977 |
ttcatgggttgatccggtccattattcaacaagattcttcggatgtttccattagcaagttcgatgtagccaaataattgagaagggttattttcttc |
36225074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 35980298 - 35980237
Alignment:
| Q |
15 |
tcaatctggtgagtactggcccatgattgcccacatcaaaagtgttttcattggagaaccaa |
76 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||| |
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| T |
35980298 |
tcaatctggtgagtactggcccataattgctcacatcaaaagtgtttccgttggagaaccaa |
35980237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 36001710 - 36001649
Alignment:
| Q |
15 |
tcaatctggtgagtactggcccatgattgcccacatcaaaagtgttttcattggagaaccaa |
76 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||| |
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|
| T |
36001710 |
tcaatctggtgagtactggcccataattgctcacatcaaaagtgtttccgttggagaaccaa |
36001649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 36219915 - 36220056
Alignment:
| Q |
352 |
tatgttgaagctggaattgaaaagggatgagcaaatttgaagggacatatgcagtataagaatattcatgggttgatccggtccattattcaacaagatt |
451 |
Q |
| |
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|||| |||||||||| ||||||| |||| |||||||||||| |||||| ||||||||||| || |||||||| |||||| |||||||||||||| |
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| T |
36219915 |
tatgatgaagctggagttgaaaaaggataagcaaatttgaatggacattagcagtataaga---tttgtgggttgagaaggtccagtattcaacaagatt |
36220011 |
T |
|
| Q |
452 |
ctttggatgtttccattagcaagttcgatgtagccaaataattga |
496 |
Q |
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| T |
36220012 |
ctcaagatgtttccatcagcacatttgtggtagccaaataattga |
36220056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 35956286 - 35956233
Alignment:
| Q |
16 |
caatctggtgagtactggcccatgattgcccacatcaaaagtgttttcattgga |
69 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |
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| T |
35956286 |
caatctggtgagtactggcccatgatttctcacatcaaaagtgtttttattgga |
35956233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 36219391 - 36219444
Alignment:
| Q |
16 |
caatctggtgagtactggcccatgattgcccacatcaaaagtgttttcattgga |
69 |
Q |
| |
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||||| ||||||||||||||||||||| | ||||||||||||||||| |||||| |
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|
| T |
36219391 |
caatcaggtgagtactggcccatgatttctcacatcaaaagtgtttttattgga |
36219444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 35950491 - 35950452
Alignment:
| Q |
16 |
caatctggtgagtactggcccatgattgcccacatcaaaa |
55 |
Q |
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|||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
35950491 |
caatctggcgagtactggcccatgattgctcacatcaaaa |
35950452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 18116343 - 18116287
Alignment:
| Q |
21 |
tggtgagtactggcccatgattgcccacatcaaaagtgttttcattggagaaccaag |
77 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |
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|
| T |
18116343 |
tggtgagtactggcccatgatttctcacatcaaacatgttttcattggagaaccaag |
18116287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 18132389 - 18132328
Alignment:
| Q |
16 |
caatctggtgagtactggcccatgattgcccacatcaaaagtgttttcattggagaaccaag |
77 |
Q |
| |
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|||| |||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||| |
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|
| T |
18132389 |
caatttggtgagtcttggcccatgatttcccacattaaacatgttttcattggagaaccaag |
18132328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 52492053 - 52492002
Alignment:
| Q |
16 |
caatctggtgagtactggcccatgattgcccacatcaaaagtgttttcattg |
67 |
Q |
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|||| |||||| ||||||||||||||| ||||||||||| ||||||||||| |
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| T |
52492053 |
caatttggtgactactggcccatgatttcccacatcaaacatgttttcattg |
52492002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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