View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_6 (Length: 512)
Name: NF18061_low_6
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 71 - 495
Target Start/End: Original strand, 48286251 - 48286675
Alignment:
| Q |
71 |
acacaaaatcacaatgcagcaaccatcgcccgaacaaaaaccaataatactaccaaaaccaccttgttatagagacccaaacatccaacaaaaaccgctt |
170 |
Q |
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| T |
48286251 |
acacaaaatcacaatgcagcaaccatcgcccgaacaaaaaccaataatactaccaaaaccaccttgttatagagacccaaacatccaacaaaaaccgctt |
48286350 |
T |
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| Q |
171 |
ccaacacgaaacccttctctcccaccttctttccgaccaaaacccaagaaacgtaattattgtcgcctatgttgttgcacattttgcatcatcttcctca |
270 |
Q |
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| T |
48286351 |
ccaacacgaaacccttctctcccaccttctttccgaccaaaacccaagaaacgtaattattgtcgcctattttgttgcacattttgcatcatcttcctca |
48286450 |
T |
|
| Q |
271 |
ttctcttcttccttttcatcctcgccgccgcagttatctacattctctatcaaccttccataccagaattccacctcggttccttccgtgttccaagttt |
370 |
Q |
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| T |
48286451 |
ttctcttcttccttttcatcctcgccgccgcagttatctacattctctaccaaccttccataccagaattccacctcggttctttccgtgttccaagttt |
48286550 |
T |
|
| Q |
371 |
caacataaccacaaaatccgacggtgcttatctcgacgcaaacacggtaacaatggtggaagtgaagaaccgtaatgcaaaaatggtgtggcgttttgaa |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48286551 |
caacataaccacaaaatccgacggtgcttatctcgacgcaaacacgataacaatggtggaagtgaagaaccgtaatgcaaaaatggtgtggcgttttgaa |
48286650 |
T |
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| Q |
471 |
caaagtagtgttcagatatgggcag |
495 |
Q |
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| T |
48286651 |
caaagtagtgttcagatatgggcag |
48286675 |
T |
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