View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_8 (Length: 457)
Name: NF18061_low_8
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 1455792 - 1455348
Alignment:
| Q |
1 |
aagaaaaggaagagaactcagaaatttccctctcagatgatgtgtgggtgatttgcccattcaatgattgttcaattttgatgagttttgatgggcttga |
100 |
Q |
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| T |
1455792 |
aagaaaaggaagagaactcagaaatttccctctcagatgatgtgtgggtgatttgtccattcaatgattgttcaattttgatgagttttgatgggcttga |
1455693 |
T |
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| Q |
101 |
aatcgtgacaaaagccgagtgcccgtcatgtcacaggttattttgcgtacaatgtaaagttccatggcatgaaggactcaactgtcaacaatttcaacga |
200 |
Q |
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| T |
1455692 |
aatcgtgacaaaagccgagtgcccgtcatgtcacatgttattttgcgtacaatgtaaagttccatggcatgaaggactcaactgtcaacaatttcaacga |
1455593 |
T |
|
| Q |
201 |
aaactagcatgctccaataaaacatacatgattgttgattcccaaaacagtaccgttccaaagaagagaagttctccctttgaaggccgtgacaacgatg |
300 |
Q |
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| T |
1455592 |
aaactagcatgttccaataaaacatacatgattgttgattcccaaaac---accgttccaaagaagagaagttctccctttgaaggccgtgacaacgatg |
1455496 |
T |
|
| Q |
301 |
aaaagaagaaggctaagaagaaagacgcgatcccagttgattctaaccaagcatcttatcaaaacttagtgaaagtgaattgcaatgaatttcaacaaca |
400 |
Q |
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| T |
1455495 |
aaaagaagaaggcgaagaagaaagacgcgatcgcagttgattctaaccaagcatcttatcaaaacttagtgaaagtgaattgcaatgaatttcaacaaca |
1455396 |
T |
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| Q |
401 |
aaaatcaaaggagaaagcaaccgttgagtccggttgtaaatgttcatc |
448 |
Q |
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| T |
1455395 |
aaaatcgaaggagaaagcaaccgttgagtccggtcgtaaatgttcatc |
1455348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 1451754 - 1451709
Alignment:
| Q |
358 |
atcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaa |
403 |
Q |
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| T |
1451754 |
atcaaaactcagtgaaagtgaagtgtaatgaattccaacaacaaaa |
1451709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 33532361 - 33532321
Alignment:
| Q |
129 |
tgtcacaggttattttgcgtacaatgtaaagttccatggca |
169 |
Q |
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| T |
33532361 |
tgtcataggttattttgtgtgcaatgtaaagttccatggca |
33532321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 16868986 - 16869026
Alignment:
| Q |
129 |
tgtcacaggttattttgcgtacaatgtaaagttccatggca |
169 |
Q |
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| T |
16868986 |
tgtcataggttattttgtgtgcaatgtaaagttccatggca |
16869026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 19314957 - 19314989
Alignment:
| Q |
149 |
acaatgtaaagttccatggcatgaaggactcaa |
181 |
Q |
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| T |
19314957 |
acaatgtaaagttccatggcatgaaggattcaa |
19314989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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