View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_9 (Length: 450)
Name: NF18061_low_9
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 51171571 - 51171994
Alignment:
| Q |
19 |
ataacatcttaactggatcaccgaaggcatggctagacttcattggttgacaaacacgactacaaatagttgaactaccactatgaatgttagcactgtc |
118 |
Q |
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| T |
51171571 |
ataacatcttaactagatcaccgaaggcatggctagacttcattggttgacaaacaagactacaaatagttgaactaccactatgaatgttagcactgtc |
51171670 |
T |
|
| Q |
119 |
gatttcaataacaagattatatgcagcctcaatgtttgagccaccactgtgattgttaacaatatcaac-tcaataacattattatacgtagcaccaatt |
217 |
Q |
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| T |
51171671 |
gatttcaataacaagattatatgcagcctcaatgtttgagccaccactgtgattgttaacaatatcaacttcaataacattattatacgtagcaccaatt |
51171770 |
T |
|
| Q |
218 |
tttgaaccaactctatgactactaacactaacgatttaaataacaagattatatatagccaaaaaggattcgtaacttgaactcac-ttcattgctgtca |
316 |
Q |
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| T |
51171771 |
tttgaaccaactctatgactactaacactaacgattccaataacaagattatatatagccaaaaaggattcgtaacttgaactcactttcattgctgtca |
51171870 |
T |
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| Q |
317 |
tttttgttgcaaaagttggcgcgaatgtttgaactacgactatgatatgattactagcattatcagctttaataataggattacatgtagttgaaaagtg |
416 |
Q |
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| T |
51171871 |
tttttgttgcaaaagttggcgcgaatgtttgaactacgactatgatatgattactagcattatcagctttaataataggattacatgtag-------ctg |
51171963 |
T |
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| Q |
417 |
aaaatggtcagtaatctacatccacttcatc |
447 |
Q |
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| T |
51171964 |
aaaatggtcagtaatctacatccacttcatc |
51171994 |
T |
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