View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18062_high_1 (Length: 533)
Name: NF18062_high_1
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18062_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 13152126 - 13152650
Alignment:
| Q |
1 |
acataaattttactatgaatcttcaaatgaagtaaggtgttgattatcgtaaattttgttacaataaaggtgcatcaaaattaatctattttttaaaacc |
100 |
Q |
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| T |
13152126 |
acataaattttactatgaatcttcaaatgaagtaaggtgttgattatcgtaaattttgttacaataaaggtgcatcaaaattaatctattttttaaaacc |
13152225 |
T |
|
| Q |
101 |
ctctatgttcatgcataatttcaatcactcattgttatatcattgcatcctaaaagctaatttcagctgaaatatagtcttttgaagggtatatgtccaa |
200 |
Q |
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| T |
13152226 |
ctctatgttcatacataatttcaatcactcattgttatatcattgcatcctaaaagctaatttcagctgaaatatagtcttttgaagggtatatgtccaa |
13152325 |
T |
|
| Q |
201 |
caaaaatgtcactttataacatcatcacatgcatataattttcatcttatgtnnnnnnntaatgtatataattttcacatcactccctaggcagagatga |
300 |
Q |
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| T |
13152326 |
caaaaatgtcactttataacatcatcacatgcatataattttcatcttatgtaaaaaaataatgtatataattttcacatcactccctaggcagagatga |
13152425 |
T |
|
| Q |
301 |
agtgtatgatcacgttagttgatagaaaaagtactgctacatacaacaagctagacgacaatttatacacataatctgcgtgcatgggtctggattttgt |
400 |
Q |
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| T |
13152426 |
agtgtatgatcacgttagttgatagaaaaagtactgctacatacaacaagctagacgacaatttatacacataatctgcgtgcatgggtctggattttgt |
13152525 |
T |
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| Q |
401 |
gaaatcactatatacagttcagtgttggaacatggcaatgagcaaaaccatgttcacaaaatgatgaactttataataaaattattcatctgtccttga- |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13152526 |
gaaatcactatatacagttcagtgttggaacatggcaatgagcaaaaccatgttcacaaaatgatgaactttataataaaattattcatctgtccttgaa |
13152625 |
T |
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| Q |
500 |
----atagtttgaactcagtataat |
520 |
Q |
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| T |
13152626 |
tagtatagtttgaactcagtataat |
13152650 |
T |
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