View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18062_high_13 (Length: 210)
Name: NF18062_high_13
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18062_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 51729687 - 51729517
Alignment:
| Q |
24 |
gcatgaagatataatttgattctcactacgtttccttccccttaatggacatagaaagagaagaaagtgatagagagatcattaccatagatctactacg |
123 |
Q |
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| T |
51729687 |
gcatgaagatataatttgattctcactacgtttccttccccttaatggacatagaaagagaagaaagtgacagagagatcattaccatagatctactacg |
51729588 |
T |
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| Q |
124 |
tgataagtcgaacgagatcatcatacataaatgaacatcctgtctagcatattttatccgaaaggtctgtg |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729587 |
tgataagtcgaacgagatcatcatacataaatgaacatcctgtctagcatattttatccgaaaggtctgtg |
51729517 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 351475 - 351423
Alignment:
| Q |
134 |
aacgagatcatcatacataaatgaacatcctgtctagcatattttatccgaaa |
186 |
Q |
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||||||| |||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
351475 |
aacgagaccatcatacataaatgaacatcctgccgagcatattttatccgaaa |
351423 |
T |
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