View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18062_high_2 (Length: 518)
Name: NF18062_high_2
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18062_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 178 - 510
Target Start/End: Original strand, 10967486 - 10967822
Alignment:
| Q |
178 |
cattggtcaaccaataaaattaacataaatattaattaaaatataaagtannnnnnn--acaaaaaacagtgatctcacgtttgtttgaaacataaaagt |
275 |
Q |
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| T |
10967486 |
cattggtcaaccaataaaattaacataaatattaattaaaatataaagtatttttttttacaaaaaacagtgatctcacgtttgtttgaaacataaaagt |
10967585 |
T |
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| Q |
276 |
gataaaa--tctatgtgccgtggtatcatctgaatttggttgcatatgtcaaattggatgaagcatgcgttcgtatattaatcgaattaatgcatgtgta |
373 |
Q |
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| T |
10967586 |
gataaaaaatctatgtgccgtggtatcatctgaatttggttgcatatgtcaaattggatgaagcatgcgttcgtatattaatcgaattaatgcatgtgta |
10967685 |
T |
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| Q |
374 |
actgaaaataaaatactaatatattatgagttgttatatataaaatcacattcttctcaatgttttttcttcgagtaaacctatgaagttaattatgtcc |
473 |
Q |
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| T |
10967686 |
actgaaaataaaatactaatatattatgagttgttatatataaaatcacattcttctcaatgttttttcttcgagtaaacctatgaagttaattatgtcc |
10967785 |
T |
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| Q |
474 |
acctctccatctaagtgaggtgtcaccctatgcttct |
510 |
Q |
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| T |
10967786 |
acctctccatctaagtgaggtgtcaccctatgattct |
10967822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 10967309 - 10967421
Alignment:
| Q |
1 |
tagtagttttgttttacccttacatgaatagacacttttatagtggtgatttatttttggaagagaaaaataaaatgttagtttgggattttagaaaata |
100 |
Q |
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| T |
10967309 |
tagtagttttgttttacccttacatgaatagacacttttatagtggtgatttatttttggaagagaaaaataaaatgttagtttgggattttagaaaata |
10967408 |
T |
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| Q |
101 |
atgaaaatagtta |
113 |
Q |
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| T |
10967409 |
atgaaaatagtta |
10967421 |
T |
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