View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18062_high_4 (Length: 416)
Name: NF18062_high_4
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18062_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 4907594 - 4907411
Alignment:
| Q |
1 |
acaccctttctgtaccaggttaaggactttaaggggattagcttctaattaagaccaagagttatcgtattccaacttcagcttcacatgcaagcttgaa |
100 |
Q |
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| T |
4907594 |
acaccctttctgtaccaggttaaggactttaaggggattagcttctaattaagaccaagagttatcgtattccaacttcagcttcacatgcaagcttgaa |
4907495 |
T |
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| Q |
101 |
gccagtttctaatttgggaggatgatttgtttggacacaaggatttgaatactctatttaagcgcacacgtttgagagaaggctg |
185 |
Q |
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| T |
4907494 |
gccagtttctaa-ttgggaggatgatttgtttggtcacaaggatttgaatactttatttaaacgcacacgtttgagagaaggctg |
4907411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 4906954 - 4906900
Alignment:
| Q |
251 |
tgtgtccaaatacttgttgcaatcaaataatatgcaatttttaaaaaagtaagta |
305 |
Q |
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| T |
4906954 |
tgtgtccaaatacttgttgcaatcaaataatatgcaatttaaaaaaaagtaagta |
4906900 |
T |
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