View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18062_high_5 (Length: 403)

Name: NF18062_high_5
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18062_high_5
NF18062_high_5
[»] chr7 (2 HSPs)
chr7 (1-386)||(41874111-41874489)
chr7 (10-115)||(9555080-9555186)
[»] chr3 (3 HSPs)
chr3 (73-142)||(9104173-9104243)
chr3 (73-115)||(16972009-16972051)
chr3 (52-148)||(16475271-16475368)
[»] chr6 (2 HSPs)
chr6 (71-120)||(11166591-11166640)
chr6 (52-148)||(25005137-25005234)
[»] chr2 (3 HSPs)
chr2 (73-161)||(23828304-23828393)
chr2 (75-140)||(11387177-11387243)
chr2 (73-130)||(44788527-44788584)
[»] chr1 (2 HSPs)
chr1 (73-141)||(24056220-24056289)
chr1 (19-53)||(18474065-18474099)
[»] chr8 (2 HSPs)
chr8 (73-131)||(40841586-40841644)
chr8 (71-120)||(10250412-10250461)
[»] chr5 (1 HSPs)
chr5 (79-120)||(27026643-27026684)
[»] chr4 (1 HSPs)
chr4 (73-141)||(69251-69319)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 41874489 - 41874111
Alignment:
Q  1 aatataaaaattcaaactttaccacttaaatatatattttaattgtttttcttgttcttttcaacggatgaaaatttctaccactatttcataacacgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41874489 aatataaaaattcaaactttaccacttaaatatatattttagttgtttttcttgttcttttcaaccgatgaaaatttctaccactatttcataacacgat 41874390  T
Q  101 cctaacacttagtaaaaacgaatgagaaaaaactcttaccttaaacactctccttcctagcaaattccaaattcccacgaaatatcttacaaggaagaag 200  Q
    ||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41874389 cctaacacttagtaagaacgaatgagaaaaaactcttatcctaaacactttccttcctagcaaattctaaattcccacgaaatatcttacaaggaagaag 41874290  T
Q  201 attgtacggacagtattacgtacagtaagagggttatatatatgatactccnnnnnnnnnngttgagaatagaagttttatgnnnnnnnngacaagagaa 300  Q
    ||||||||||||| ||    ||||||||||||||  |||||||||||||||          |||||||||||||||||||||        ||||||||||    
T  41874289 attgtacggacagaat----tacagtaagagggt--tatatatgatactcctttttttttggttgagaatagaagttttatg-tttttttgacaagagaa 41874197  T
Q  301 gtggtactcgtacactactttaaaagggagtaatttaatttaatagcttaagccaaaatcatggaaatatttagtaccttgtctcc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41874196 gtggtactcgtacactactttaaaagggagtaatttaatttaatagcttaagccaaaatcatggaaatatttagtaccttgtctcc 41874111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 9555080 - 9555186
Alignment:
Q  10 attcaaactttac-cacttaaatatatattttaattgtttttcttgttcttttcaacggatgaaaatttctaccactatttcataacacgatcctaacac 108  Q
    ||||||||||||  |||||||||||||| |||||||||||||||| ||||||| ||| ||| | |||||| ||||||||||||||| |   ||||| |||    
T  9555080 attcaaactttaatcacttaaatatataatttaattgtttttctttttctttttaaccgattagaatttcaaccactatttcataagagagtcctagcac 9555179  T
Q  109 ttagtaa 115  Q
    |||||||    
T  9555180 ttagtaa 9555186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 9104243 - 9104173
Alignment:
Q  73 aatttctaccactatttcataacacgatcctaacacttagtaaaaacgaat-gagaaaaaactcttacctt 142  Q
    |||| |||||||||||| |||||||  ||||||||||||||||||||| || | |||||||| ||||||||    
T  9104243 aattgctaccactatttaataacacagtcctaacacttagtaaaaacgtatggggaaaaaacccttacctt 9104173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 16972051 - 16972009
Alignment:
Q  73 aatttctaccactatttcataacacgatcctaacacttagtaa 115  Q
    ||||||||| |||||||||||||||  ||||||||||||||||    
T  16972051 aatttctactactatttcataacaccgtcctaacacttagtaa 16972009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 16475368 - 16475271
Alignment:
Q  52 ttgttcttttcaacggatgaaaatttctaccactatttcataacacgatcctaacacttagtaaaaacgaatgag-aaaaaactcttaccttaaacac 148  Q
    |||||||||||||| ||  | ||| |||||| ||| |||||||||  ||| ||  ||||||||| |||| ||| | ||||||||||||||||||||||    
T  16475368 ttgttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactcttaccttaaacac 16475271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 11166591 - 11166640
Alignment:
Q  71 aaaatttctaccactatttcataacacgatcctaacacttagtaaaaacg 120  Q
    ||||| |||||||||||||||||| | |||||||||||||||||| ||||    
T  11166591 aaaatctctaccactatttcataataagatcctaacacttagtaagaacg 11166640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 25005234 - 25005137
Alignment:
Q  52 ttgttcttttcaacggatgaaaatttctaccactatttcataacacgatcctaacacttagtaaaaacgaatgag-aaaaaactcttaccttaaacac 148  Q
    |||||||||||||| ||  | ||| |||||| ||| |||||||||  ||| ||  ||||||||| |||| ||| | ||||||||||||||||||||||    
T  25005234 ttgttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactcttaccttaaacac 25005137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 23828304 - 23828393
Alignment:
Q  73 aatttctaccactatttcataacacgatcctaacacttagtaaaaacgaatgagaaaaaact-cttaccttaaacactctccttcctagc 161  Q
    ||||||||||||||||||||||||   |||||||||||||||| ||||  || ||||||| | ||||||||| || || | |||||||||    
T  23828304 aatttctaccactatttcataacaaagtcctaacacttagtaagaacgtgtgggaaaaaaatccttaccttagacgctttacttcctagc 23828393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 11387243 - 11387177
Alignment:
Q  75 tttctaccactatttcataacacgatcctaacacttagtaaaaacgaatgag-aaaaaactcttacc 140  Q
    ||||||| |||||||||||||||| |||||| | ||||||| |||| ||| | ||||||||||||||    
T  11387243 tttctactactatttcataacacggtcctaatatttagtaagaacgtatgggaaaaaaactcttacc 11387177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 44788584 - 44788527
Alignment:
Q  73 aatttctaccactatttcataacacgatcctaacacttagtaaaaacgaatgagaaaa 130  Q
    |||| |||||||||||| |||||||  |||||||||||||||| |||| ||| |||||    
T  44788584 aattactaccactatttaataacacagtcctaacacttagtaagaacgtatgggaaaa 44788527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 24056220 - 24056289
Alignment:
Q  73 aatttctaccactatttcataacacgatcctaacacttagtaaaaacgaat-gagaaaaaactcttacct 141  Q
    |||||||||||||||||| ||||| | ||||| || ||||||| |||| || ||||||||||||||||||    
T  24056220 aatttctaccactatttcgtaacaaggtcctagcatttagtaagaacgtatggagaaaaaactcttacct 24056289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 18474065 - 18474099
Alignment:
Q  19 ttaccacttaaatatatattttaattgtttttctt 53  Q
    ||||||| |||||||||||||||||||||||||||    
T  18474065 ttaccacctaaatatatattttaattgtttttctt 18474099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 40841586 - 40841644
Alignment:
Q  73 aatttctaccactatttcataacacgatcctaacacttagtaaaaacgaatgagaaaaa 131  Q
    |||| |||||||||||| |||||||  |||||||||||||||| |||| ||| ||||||    
T  40841586 aattgctaccactatttaataacacagtcctaacacttagtaagaacgtatgggaaaaa 40841644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 10250461 - 10250412
Alignment:
Q  71 aaaatttctaccactatttcataacacgatcctaacacttagtaaaaacg 120  Q
    ||||||||||||||||||| | |||||| ||| |||||||||||| ||||    
T  10250461 aaaatttctaccactattttaaaacacggtcccaacacttagtaagaacg 10250412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 27026684 - 27026643
Alignment:
Q  79 taccactatttcataacacgatcctaacacttagtaaaaacg 120  Q
    ||||||||||| ||||||| |||||| |||||||||||||||    
T  27026684 taccactatttaataacacaatcctagcacttagtaaaaacg 27026643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 69319 - 69251
Alignment:
Q  73 aatttctaccactatttcataacacgatcctaacacttagtaaaaacgaatgagaaaaaactcttacct 141  Q
    |||| |||||||||||| |||||||  |||||||||||||||   ||| ||| |||||||| |||||||    
T  69319 aattgctaccactatttaataacacagtcctaacacttagtatggacgtatgggaaaaaacccttacct 69251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University