View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18062_high_9 (Length: 359)

Name: NF18062_high_9
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18062_high_9
NF18062_high_9
[»] chr8 (6 HSPs)
chr8 (6-336)||(44223625-44223954)
chr8 (119-173)||(28084287-28084341)
chr8 (112-173)||(12249480-12249541)
chr8 (119-172)||(13284267-13284320)
chr8 (120-172)||(1230664-1230716)
chr8 (120-156)||(42932231-42932267)
[»] chr4 (11 HSPs)
chr4 (119-173)||(52936646-52936700)
chr4 (115-173)||(42344616-42344674)
chr4 (119-175)||(27871380-27871436)
chr4 (139-175)||(41346759-41346795)
chr4 (119-173)||(31041367-31041421)
chr4 (137-175)||(36720681-36720719)
chr4 (119-173)||(37930849-37930903)
chr4 (119-173)||(48171886-48171940)
chr4 (119-156)||(3299096-3299133)
chr4 (128-173)||(49579960-49580005)
chr4 (119-175)||(12712020-12712076)
[»] chr7 (3 HSPs)
chr7 (137-175)||(29339444-29339482)
chr7 (123-173)||(38911304-38911354)
chr7 (119-172)||(44718815-44718868)
[»] chr5 (9 HSPs)
chr5 (127-173)||(29962363-29962409)
chr5 (127-173)||(30012389-30012435)
chr5 (125-175)||(39559143-39559193)
chr5 (119-168)||(33899845-33899894)
chr5 (139-175)||(3416583-3416619)
chr5 (114-172)||(13953716-13953774)
chr5 (122-175)||(5246161-5246214)
chr5 (138-175)||(7409162-7409199)
chr5 (123-175)||(29560896-29560948)
[»] chr2 (5 HSPs)
chr2 (119-172)||(29896296-29896349)
chr2 (119-173)||(40967373-40967427)
chr2 (124-173)||(6228639-6228688)
chr2 (119-175)||(14483228-14483284)
chr2 (119-175)||(40295460-40295516)
[»] chr1 (3 HSPs)
chr1 (23-68)||(43449541-43449586)
chr1 (119-175)||(4806797-4806853)
chr1 (114-154)||(7803429-7803469)
[»] chr3 (8 HSPs)
chr3 (119-175)||(2078243-2078299)
chr3 (120-172)||(29791782-29791834)
chr3 (114-175)||(32651647-32651708)
chr3 (139-172)||(45669640-45669673)
chr3 (23-56)||(51335109-51335142)
chr3 (141-173)||(29800094-29800126)
chr3 (139-175)||(37436962-37436998)
chr3 (120-172)||(43630421-43630473)
[»] chr6 (1 HSPs)
chr6 (119-159)||(17113462-17113502)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 6 - 336
Target Start/End: Original strand, 44223625 - 44223954
Alignment:
Q  6 agtagcaaaggaaacaaaattaaataatatgtatttcttaaataattaaatgatacgtatttttaaatttgctccnnnnnnnntatttttatgnnnnnnn 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||        ||||||||||           
T  44223625 agtagaaaaggaaacaaaattaaataatatgtatttcttaaataattaaatgatccgtatttttaaatttggtccaaaaaaaatatttttatgttttttt 44223724  T
Q  106 ngtggagaccgatgtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaagttagataaattatttttatttatgtttgtgat 205  Q
     ||||||||||||||||||||| | || |||| |||||||||||||| |||||| ||| ||||||||| |||||||||||||||||||||| |||||||     
T  44223725 tgtggagaccgatgtttgaaccccgaatctcgtatatattatacattatttctaccaactgagttaagctagataaattatttttatttatatttgtgac 44223824  T
Q  206 caaatctcgtgacaacgtaatttcttttttagtcttcgaaatgtataggtgaatggtttagtcaattctttttagggaattttgttaattgtataaaaaa 305  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  44223825 caaatctcgtgacaacgtaattt-ttttttagtcttcgaaatgtataggtgaacggtttagtcaattctttttaggggattttgttaattgtataaaaaa 44223923  T
Q  306 gataaattaaaatatgtgacaaatgagagag 336  Q
    ||||||||||||||||||| |||||||||||    
T  44223924 gataaattaaaatatgtgataaatgagagag 44223954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 28084341 - 28084287
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    |||||||| || ||||| ||||||||||| |||||| |||||||| |||||||||    
T  28084341 gtttgaacatcgaaccttgcatatattattcattgtctctatcaactgagttaag 28084287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 12249480 - 12249541
Alignment:
Q  112 gaccgatgtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    |||||||||||||||  | ||||| |||||||||||||||| | | || |||||||||||||    
T  12249480 gaccgatgtttgaacaccgaaccttgcatatattatacattatctttaccaattgagttaag 12249541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 13284267 - 13284320
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaa 172  Q
    |||||||||||||||||   |||||||||||||||||  |||||| ||||||||    
T  13284267 gtttgaacctcaaaccttatatatattatacattgttcatatcaactgagttaa 13284320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 1230664 - 1230716
Alignment:
Q  120 tttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaa 172  Q
    ||||||||||||||||  |||||||||| ||||||| ||| ||| ||||||||    
T  1230664 tttgaacctcaaaccttacatatattatgcattgttcctaccaactgagttaa 1230716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 42932231 - 42932267
Alignment:
Q  120 tttgaacctcaaacctcgcatatattatacattgttt 156  Q
    ||||||||||||||||  |||||||||||||||||||    
T  42932231 tttgaacctcaaaccttacatatattatacattgttt 42932267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 52936700 - 52936646
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    |||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  52936700 gtttgaacctcaaaccttacatatattatacattgtttctatcaactgagttaag 52936646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 42344616 - 42344674
Alignment:
Q  115 cgatgtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    |||||||||||||||  |||| ||||||||||||||||||| ||| |||||||||||||    
T  42344616 cgatgtttgaacctcggaccttgcatatattatacattgttcctaccaattgagttaag 42344674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 27871380 - 27871436
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaagtt 175  Q
    |||||||||||  |||| |||||||||||||||||| |||||||| |||| ||||||    
T  27871380 gtttgaacctcggaccttgcatatattatacattgtctctatcaaatgagctaagtt 27871436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 41346795 - 41346759
Alignment:
Q  139 atatattatacattgtttctatcaattgagttaagtt 175  Q
    ||||||||| |||||||||||||||||||||||||||    
T  41346795 atatattatgcattgtttctatcaattgagttaagtt 41346759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 31041367 - 31041421
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    |||| |||| || |||| ||||||||||||||||||||||| ||| |||||||||    
T  31041367 gtttaaaccccagaccttgcatatattatacattgtttctaccaaatgagttaag 31041421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 36720719 - 36720681
Alignment:
Q  137 gcatatattatacattgtttctatcaattgagttaagtt 175  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  36720719 gcatatattatacattgttcctaccaattgagttaagtt 36720681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 37930849 - 37930903
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    |||||||||||| |||| ||||||||||| ||||||  ||| |||||||||||||    
T  37930849 gtttgaacctcagaccttgcatatattatgcattgtacctaccaattgagttaag 37930903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 48171940 - 48171886
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    ||||||||||  ||||| |||||||||||||||||| |||| ||| |||||||||    
T  48171940 gtttgaacctagaaccttgcatatattatacattgtctctaccaactgagttaag 48171886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 3299096 - 3299133
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgttt 156  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  3299096 gtttgaacctcaaaccttgcatatattatgcattgttt 3299133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 49580005 - 49579960
Alignment:
Q  128 tcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    |||||||| ||||||||||||||||||  ||| |||||||||||||    
T  49580005 tcaaaccttgcatatattatacattgtccctaccaattgagttaag 49579960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 12712020 - 12712076
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaagtt 175  Q
    ||||||||  |||| || ||||||||||| |||||| |||||||| |||||||||||    
T  12712020 gtttgaactccaaatcttgcatatattatgcattgtctctatcaaatgagttaagtt 12712076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 29339444 - 29339482
Alignment:
Q  137 gcatatattatacattgtttctatcaattgagttaagtt 175  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  29339444 gcatatattatacattatttctatcaattgagttaagtt 29339482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 38911354 - 38911304
Alignment:
Q  123 gaacctcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    |||| |||||||| |||||||||||||||||| | |||||| |||||||||    
T  38911354 gaacttcaaaccttgcatatattatacattgtctttatcaactgagttaag 38911304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 44718815 - 44718868
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaa 172  Q
    ||||||||| | || || |||||||||||| ||||||| |||||||||||||||    
T  44718815 gtttgaaccccgaatcttgcatatattatatattgtttatatcaattgagttaa 44718868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 29962409 - 29962363
Alignment:
Q  127 ctcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  29962409 ctcaaaccttgcatatattatacattgtttctatcaactgagctaag 29962363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 30012389 - 30012435
Alignment:
Q  127 ctcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  30012389 ctcaaaccttgcatatattatacattgtttctatcaactgagctaag 30012435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 39559143 - 39559193
Alignment:
Q  125 acctcaaacctcgcatatattatacattgtttctatcaattgagttaagtt 175  Q
    ||||||||| | |||||||||||||||||||||||| |||| |||||||||    
T  39559143 acctcaaactttgcatatattatacattgtttctattaattaagttaagtt 39559193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 33899845 - 33899894
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgag 168  Q
    ||||||||||||||| |||||||||||||  |||||| ||||||||||||    
T  33899845 gtttgaacctcaaacatcgcatatattatgtattgttcctatcaattgag 33899894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 3416583 - 3416619
Alignment:
Q  139 atatattatacattgtttctatcaattgagttaagtt 175  Q
    ||||||||||||||||||||||||| |||||||||||    
T  3416583 atatattatacattgtttctatcaactgagttaagtt 3416619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 13953716 - 13953774
Alignment:
Q  114 ccgatgtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaa 172  Q
    |||| ||||||||| |||||||  | |||||||||||||||  ||||||||||||||||    
T  13953716 ccgaagtttgaaccccaaaccttacgtatattatacattgtacctatcaattgagttaa 13953774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 5246161 - 5246214
Alignment:
Q  122 tgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaagtt 175  Q
    |||||||| ||||| ||||||||||| |||||| | || |||||||||||||||    
T  5246161 tgaacctcgaaccttgcatatattatgcattgtctataccaattgagttaagtt 5246214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 7409162 - 7409199
Alignment:
Q  138 catatattatacattgtttctatcaattgagttaagtt 175  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  7409162 catatattatacattgttcctatcaattaagttaagtt 7409199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 29560896 - 29560948
Alignment:
Q  123 gaacctcaaacctcgcatatattatacattgtttctatcaattgagttaagtt 175  Q
    ||||||| || || |||||||||||||||||||  || |||||||||||||||    
T  29560896 gaacctcgaatcttgcatatattatacattgttgttaccaattgagttaagtt 29560948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 29896296 - 29896349
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaa 172  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||| ||| ||||    
T  29896296 gtttgaaccccaaaccttgcatatattatgcattgtttctatcaactgaattaa 29896349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 40967373 - 40967427
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    ||||||||||||||||| ||||||||||| ||||||   |||||| |||||||||    
T  40967373 gtttgaacctcaaaccttgcatatattatgcattgtccttatcaactgagttaag 40967427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 6228688 - 6228639
Alignment:
Q  124 aacctcaaacctcgcatatattatacattgtttctatcaattgagttaag 173  Q
    ||||||| |||| ||||||||||| |||||||| ||||||||||| ||||    
T  6228688 aacctcataccttgcatatattatgcattgtttatatcaattgagctaag 6228639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 14483228 - 14483284
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaagtt 175  Q
    |||||||||||| ||||   |||||||||||||||| ||||  ||||||||||||||    
T  14483228 gtttgaacctcagaccttatatatattatacattgtctctagtaattgagttaagtt 14483284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 40295460 - 40295516
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaagtt 175  Q
    ||||||||||| || || ||||| ||||| |||||||  ||||||||||||||||||    
T  40295460 gtttgaacctcgaatcttgcatacattatgcattgttcatatcaattgagttaagtt 40295516  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 43449541 - 43449586
Alignment:
Q  23 aattaaataatatgtatttcttaaataattaaatgatacgtatttt 68  Q
    ||||||||||||||||||| | |||||||||||||||| |||||||    
T  43449541 aattaaataatatgtatttttaaaataattaaatgatatgtatttt 43449586  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 4806797 - 4806853
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaagtt 175  Q
    |||||||||||||||||  ||||||||||||||||| |||| ||| ||| |||||||    
T  4806797 gtttgaacctcaaaccttacatatattatacattgtctctaccaactgaattaagtt 4806853  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 7803469 - 7803429
Alignment:
Q  114 ccgatgtttgaacctcaaacctcgcatatattatacattgt 154  Q
    |||| |||||||||||| |||| ||||||||||||||||||    
T  7803469 ccgaagtttgaacctcagaccttgcatatattatacattgt 7803429  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 2078299 - 2078243
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaagtt 175  Q
    ||||||||| ||||||| ||||||||||| |||||| |||| ||| |||||||||||    
T  2078299 gtttgaaccccaaaccttgcatatattatgcattgtctctaccaactgagttaagtt 2078243  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 29791834 - 29791782
Alignment:
Q  120 tttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaa 172  Q
    ||||||||||||||||  ||||||||||  |||||||||||||| ||||||||    
T  29791834 tttgaacctcaaaccttacatatattatgtattgtttctatcaactgagttaa 29791782  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 32651708 - 32651647
Alignment:
Q  114 ccgatgtttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaagtt 175  Q
    |||| |||||||||   ||||| ||||||||||||| || |||||||||| |||||||||||    
T  32651708 ccgaggtttgaaccatgaaccttgcatatattatacgttatttctatcaactgagttaagtt 32651647  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 45669640 - 45669673
Alignment:
Q  139 atatattatacattgtttctatcaattgagttaa 172  Q
    ||||||||||||||||||||| ||||||||||||    
T  45669640 atatattatacattgtttctaccaattgagttaa 45669673  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 51335109 - 51335142
Alignment:
Q  23 aattaaataatatgtatttcttaaataattaaat 56  Q
    ||||||||||||||||||| ||||||||||||||    
T  51335109 aattaaataatatgtattttttaaataattaaat 51335142  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 29800094 - 29800126
Alignment:
Q  141 atattatacattgtttctatcaattgagttaag 173  Q
    |||||||||||||| ||||||||||||||||||    
T  29800094 atattatacattgtctctatcaattgagttaag 29800126  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 37436998 - 37436962
Alignment:
Q  139 atatattatacattgtttctatcaattgagttaagtt 175  Q
    |||||||||||||||||| |||||| |||||||||||    
T  37436998 atatattatacattgtttttatcaagtgagttaagtt 37436962  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 43630421 - 43630473
Alignment:
Q  120 tttgaacctcaaacctcgcatatattatacattgtttctatcaattgagttaa 172  Q
    ||||||||||||||||  |||||||||| |||||||  || ||||||||||||    
T  43630421 tttgaacctcaaaccttacatatattatgcattgttcataccaattgagttaa 43630473  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 17113462 - 17113502
Alignment:
Q  119 gtttgaacctcaaacctcgcatatattatacattgtttcta 159  Q
    |||||||||||| |||| ||||||||||| |||||||||||    
T  17113462 gtttgaacctcagaccttgcatatattatgcattgtttcta 17113502  T

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