View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18062_low_11 (Length: 321)
Name: NF18062_low_11
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18062_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 13882104 - 13881813
Alignment:
| Q |
9 |
gcagaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccattttctaaa |
108 |
Q |
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| T |
13882104 |
gcagaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggataatgcgcatgaagttgaaggagatggaacgtcattgccattttctaaa |
13882005 |
T |
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| Q |
109 |
cgtgaagccattggcaaagcatgtaccccatttatgttcttactagacattcactcccttctgactttcaaaaccttaattggttttctctgtagtt--- |
205 |
Q |
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| T |
13882004 |
cgtgaagccattggcaaagcatgtaccccatttatgttcttactagacattcactcccttctgactttcaaaaccttaattggttttctctgtagtttca |
13881905 |
T |
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| Q |
206 |
----tcaagttgtataattagtgtataattagcacagttacctttcattcagtatgattgtactctactaaaattataatgtctaaattata |
293 |
Q |
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| T |
13881904 |
actttcaagttgtataattattgtataattagcacagttacctttcattcagtatgattgtactctactaaaattataatgtctaaattata |
13881813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 16024562 - 16024464
Alignment:
| Q |
11 |
agaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccattttctaaacg |
110 |
Q |
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| T |
16024562 |
agaacatgatgataaggctgaaagtgaaggtgaagctgaag-gaatggctgatgcacatgatgttgaaggagatggaacatcattaccattttctgaacg |
16024464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 13883897 - 13883806
Alignment:
| Q |
11 |
agaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccatttt |
103 |
Q |
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| T |
13883897 |
agaacatgataataaggctgaaagtggaggtgaagctgaag-cgatggctgatgcgcatgatgttgaagaagatggaaagttattgccatttt |
13883806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 14393132 - 14393221
Alignment:
| Q |
11 |
agaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccattttct |
105 |
Q |
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| T |
14393132 |
agaacgtgatagtaaggctgaaagtgaaggtgaagctaa--atgatggctaatgcccct---gttgaaggagatggaatgtcattgccattttct |
14393221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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