View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18062_low_12 (Length: 319)

Name: NF18062_low_12
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18062_low_12
NF18062_low_12
[»] chr8 (8 HSPs)
chr8 (1-309)||(29234146-29234454)
chr8 (143-286)||(29311026-29311169)
chr8 (143-248)||(29317581-29317686)
chr8 (144-248)||(29285754-29285858)
chr8 (143-237)||(29340553-29340647)
chr8 (148-248)||(29357386-29357486)
chr8 (194-237)||(29245699-29245742)
chr8 (195-248)||(29223778-29223831)
[»] chr2 (4 HSPs)
chr2 (135-248)||(30919551-30919664)
chr2 (135-248)||(30931038-30931151)
chr2 (140-236)||(30910108-30910204)
chr2 (136-208)||(40028468-40028537)
[»] chr3 (1 HSPs)
chr3 (142-236)||(43815048-43815142)
[»] chr5 (1 HSPs)
chr5 (140-236)||(14497536-14497632)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 29234454 - 29234146
Alignment:
Q  1 aagataaaaatagtcagagcaaagatttaaataaatgaaatcgaaattgctacgttggatatatatgtatgtatgtatgtacgatttttgtgattgcata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29234454 aagataaaaatagtcagagcaaagatttaaataaatgaaatcgaaattgctacgttggatatatatgtatgtatatatgtacgatttttgtgattgcata 29234355  T
Q  101 cctcatgttcaatggtattgctgtccattttaatttgatttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29234354 cctcatgttcaatggtattgctgtccattttaatttgatttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgctcttttgttct 29234255  T
Q  201 tctaattggaattgattcttcgggacatgattcaccatataagctccaaacttgatgattatcactgaaattacccatttggttatacccttgtggtctt 300  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29234254 tccaattggaattgattcttcgggacatgattcaccatataagctccaaacttgatgattatcactgaaattacccatttagttatacccttgtggtctt 29234155  T
Q  301 ttttgatga 309  Q
    ||| |||||    
T  29234154 tttggatga 29234146  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 29311169 - 29311026
Alignment:
Q  143 attttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcaccatataa 242  Q
    ||||||||||||| | |||||||||| | |||||||| | |||||| |   || |||||||||||||||||| | |||| ||||||||||||||| | ||    
T  29311169 attttcttccaaaatggctaatagagtcagctcttaacaagtcttgttccgttattcttctaattggaattgttccttcaggacatgattcaccagacaa 29311070  T
Q  243 gctccaaacttgatgattatcactgaaattacccatttggttat 286  Q
     ||||| | |||| |  |||||||| |||||||  |||||||||    
T  29311069 tctccacaattgagggatatcactgtaattacctttttggttat 29311026  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 29317686 - 29317581
Alignment:
Q  143 attttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcaccatataa 242  Q
    |||||||||||||||   ||||||||||| ||||||| | |||||| | | || ||||||||| |||||||| | | |||||||||||||||||| | ||    
T  29317686 attttcttccaaattgagtaatagagccgactcttaacacgtcttgttctgttattcttctaactggaattgttccatcgggacatgattcaccagacaa 29317587  T
Q  243 gctcca 248  Q
    ||||||    
T  29317586 gctcca 29317581  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 29285858 - 29285754
Alignment:
Q  144 ttttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcaccatataag 243  Q
    ||||||||||||| ||||||||||| |  |||||||||||||||  |   || |||||||||||||||||| | | || ||||||||||||||| ||||     
T  29285858 ttttcttccaaatctgctaatagagtcaactcttaatatgtcttcttcggttattcttctaattggaattgttccatcaggacatgattcaccagataaa 29285759  T
Q  244 ctcca 248  Q
    |||||    
T  29285758 ctcca 29285754  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 29340647 - 29340553
Alignment:
Q  143 attttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcacca 237  Q
    |||||||||||||||   |||| || ||||||||||| | |||||| |   |||||||||||| |||||||| | ||||||||||||||||||||    
T  29340647 attttcttccaaattgagtaatcgatccggctcttaacaagtcttgttcggttgttcttctaactggaattgttccttcgggacatgattcacca 29340553  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 29357486 - 29357386
Alignment:
Q  148 cttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcaccatataagctcc 247  Q
    |||||||||||||||||||||   |||||||| | |||||| | | ||  ||||||||||||||||| | |||| || |||||||||||| | |||||||    
T  29357486 cttccaaatttgctaatagagttagctcttaacaagtcttgttctgttactcttctaattggaattgttccttcagggcatgattcaccagacaagctcc 29357387  T
Q  248 a 248  Q
    |    
T  29357386 a 29357386  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 29245742 - 29245699
Alignment:
Q  194 ttgttcttctaattggaattgattcttcgggacatgattcacca 237  Q
    ||||||||||||||||||||| | |||| |||||||||||||||    
T  29245742 ttgttcttctaattggaattgttccttcaggacatgattcacca 29245699  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 29223831 - 29223778
Alignment:
Q  195 tgttcttctaattggaattgattcttcgggacatgattcaccatataagctcca 248  Q
    ||||| |||||||| ||| | |||||| ||||||||||||||| ||||||||||    
T  29223831 tgttcgtctaattgcaatcgtttcttctggacatgattcaccagataagctcca 29223778  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 30919551 - 30919664
Alignment:
Q  135 ttgatttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattca 234  Q
    |||||||||||||||||||||  || |||||||||  ||||||||||||||||  | ||||||||||||||||||||  ||| |||| |||||||||||     
T  30919551 ttgatttaattttcttccaaacgtgttaatagagctagctcttaatatgtcttcttcttttgttcttctaattggaacagatccttctggacatgattcg 30919650  T
Q  235 ccatataagctcca 248  Q
    ||| ||||||||||    
T  30919651 ccagataagctcca 30919664  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 30931038 - 30931151
Alignment:
Q  135 ttgatttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattca 234  Q
    |||| ||||||||||||||||  ||  ||||||||  ||||||||||||||||  | ||||| ||||||||||||||||| | |||| ||||||||||||    
T  30931038 ttgacttaattttcttccaaacgtgtcaatagagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttctggacatgattca 30931137  T
Q  235 ccatataagctcca 248  Q
     |||||||||||||    
T  30931138 tcatataagctcca 30931151  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 30910108 - 30910204
Alignment:
Q  140 ttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcacc 236  Q
    ||||||||||||||||  || ||| ||||   ||||||||||| || |  ||||||||||||||||||||||||| | |||| | ||||||||||||    
T  30910108 ttaattttcttccaaacgtgttaacagagttagctcttaatatatcctctttttttgttcttctaattggaattgttccttctgaacatgattcacc 30910204  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 40028537 - 40028468
Alignment:
Q  136 tgatttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattg 208  Q
    ||||||||||||||||||||  ||||||||||    | |||||||||||||||   |||||||||||||||||    
T  40028537 tgatttaattttcttccaaacctgctaatagatttagttcttaatatgtcttg---ttttgttcttctaattg 40028468  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 43815048 - 43815142
Alignment:
Q  142 aattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcacc 236  Q
    ||||||||| ||||| || | | |||||| ||||||||||||||||| | | |||||||||||||||||||||   |||| ||||||||||||||    
T  43815048 aattttctttcaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcacc 43815142  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 14497536 - 14497632
Alignment:
Q  140 ttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcacc 236  Q
    ||||||||||||||||| || | ||||| |  || ||||| |||||||| | | ||||||||||||| ||||||| | |||| ||||||||||||||    
T  14497536 ttaattttcttccaaatgtgttgatagaacttgcccttaacatgtcttgttctgttgttcttctaatcggaattgttccttctggacatgattcacc 14497632  T

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