View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18062_low_13 (Length: 241)
Name: NF18062_low_13
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18062_low_13 |
 | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 34296440 - 34296317
Alignment:
| Q |
99 |
accatcaatgacaccaattttgtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatatgt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34296440 |
accatcaatgacaccaattttgtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatatgt |
34296341 |
T |
|
| Q |
199 |
gagactcgaattttaccaagttga |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34296340 |
gagactcgaattttaccaagttga |
34296317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 24485583 - 24485708
Alignment:
| Q |
99 |
accatcaatgacaccaatttt--gtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatat |
196 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24485583 |
accatcaatgacaccaattttttgtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatat |
24485682 |
T |
|
| Q |
197 |
gtgagactcgaattttaccaagttga |
222 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
24485683 |
gtgagactcgaattttaccaagttga |
24485708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 24493935 - 24494042
Alignment:
| Q |
115 |
attttgtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatatgtgagactcgaattttac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24493935 |
attttgtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatatgtgagactcgaattttac |
24494034 |
T |
|
| Q |
215 |
caagttga |
222 |
Q |
| |
|
|||||||| |
|
|
| T |
24494035 |
caagttga |
24494042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 58037 - 58138
Alignment:
| Q |
103 |
tcaatgacaccaattttgtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatatgtgaga |
202 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| || |||||||| | || || || | |||||||||||| |||| ||||| ||| || || |||| |
|
|
| T |
58037 |
tcaatgacacctattttgtctctgagaagtgaaaaccttgtgcgatgcaatggcttagtcagaatgtctgcaaggtgattctttgaagagatgtgagaga |
58136 |
T |
|
| Q |
203 |
ct |
204 |
Q |
| |
|
|| |
|
|
| T |
58137 |
ct |
58138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University