View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18062_low_16 (Length: 204)

Name: NF18062_low_16
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18062_low_16
NF18062_low_16
[»] chr6 (3 HSPs)
chr6 (10-189)||(12344433-12344612)
chr6 (31-180)||(12308719-12308868)
chr6 (31-168)||(35189015-35189152)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 12344433 - 12344612
Alignment:
Q  10 aaaagatgataaatatagaagtacctgcattctcataaagaggtcagaactaactttggtggaaaatcggtttttggtgaattcatagcgcaacctttct 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12344433 aaaagatgataaatatagaagtacctgcattctcataaagaggtcagaactaactttggtggaaaatcggtttttggtgaattcatagcgcaacctttca 12344532  T
Q  110 atctcatcacgttcttgttgagttccagcatttggatcgaattcccagtgttgacgtccaatgaaattgttccttgaaat 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12344533 atctcatcacgttcttgttgagttccagcatttggatcgaattcccagtgttgacgtccaatgaaattgttccctgaaat 12344612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 12308719 - 12308868
Alignment:
Q  31 tacctgcattctcataaagaggtcagaactaactttggtggaaaatcggtttttggtgaattcatagcgcaacctttctatctcatcacgttcttgttga 130  Q
    ||||||||||||||| ||||| |||| |||   |||| |||||||||| ||||||||||||||||  || | ||||||||||||||||||||||||||||    
T  12308719 tacctgcattctcatgaagagatcagcactttgtttgttggaaaatcgatttttggtgaattcatgtcgtagcctttctatctcatcacgttcttgttga 12308818  T
Q  131 gttccagcatttggatcgaattcccagtgttgacgtccaatgaaattgtt 180  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  12308819 gttccagcatttggatcgaattcccaatgttgacgtcctatgaaattgtt 12308868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 35189015 - 35189152
Alignment:
Q  31 tacctgcattctcataaagaggtcagaactaactttggtggaaaatcggtttttggtgaattcatagcgcaacctttctatctcatcacgttcttgttga 130  Q
    ||||||||||||||| ||||||||||||||   |||| |||| |||| |||||||||||||| |  ||| | |||||| |||||| || |||||| | |     
T  35189015 tacctgcattctcatgaagaggtcagaactttgtttgatggagaatctgtttttggtgaattgaatgcgtagcctttcaatctcagcatgttcttctggt 35189114  T
Q  131 gttccagcatttggatcgaattcccagtgttgacgtcc 168  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  35189115 gttcctgcatttggatcaaattcccagtgttgacgtcc 35189152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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