View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18062_low_17 (Length: 203)
Name: NF18062_low_17
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18062_low_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 37937272 - 37937172
Alignment:
| Q |
103 |
cactaatggagcttagcaaagtaacactagagatattcacaaaactagaacaacaatggctatcagtttcacaatgtggaacaacatccaaaactcgcat |
202 |
Q |
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| T |
37937272 |
cactaatggagcttagcaaagtaacactagagatattcacaaaactagaacaacaatggctatcagtttcacaatgtggaacaacatccaaaactcgcat |
37937173 |
T |
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| Q |
203 |
t |
203 |
Q |
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| T |
37937172 |
t |
37937172 |
T |
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Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 37937362 - 37937294
Alignment:
| Q |
5 |
tgcaacaactctcacttcctctgcttcatcactcactaacacagaatcaaagagaggggtgtaggaagt |
73 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937362 |
tgcaacaaccctcacttcctctgcttcatcactcactaacacagaatcaaagagaggggtgtaggaagt |
37937294 |
T |
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