View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18062_low_3 (Length: 467)
Name: NF18062_low_3
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18062_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 13881377 - 13881821
Alignment:
| Q |
1 |
gtaacacaagttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacactacttaaaactccaggagcata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881377 |
gtaacacaagttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacactacttaaaactccaggagcata |
13881476 |
T |
|
| Q |
101 |
tttaaataggcaagagtcaaacttcaaatgnnnnnnnnnnnnnnnnncttgcatattcaagcatattcaatacgatatatgttctaatcgtgtagaacac |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13881477 |
tttaaataggcaagagtcaaacttcaaatgaaaaaaggaaaagaaaacttgcatat----------tcaatacgatatatgttctaatcgtgtagaacac |
13881566 |
T |
|
| Q |
201 |
aagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcatatgcatatagttgaggaagcttattatccatctcatcagtcac |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
13881567 |
aagcattttcgtggtaaactatatcgacaaacttttcaagttttattga-ttttcatatgcatatagttgaagaagcttaatatccatctcatcagtcac |
13881665 |
T |
|
| Q |
301 |
agcatcttgaagctgaaatagaagtacacgcattaagtgtcagaaagaatgaatggtaccaatgtcataaaaagaggaacttatggctttaacaatttaa |
400 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881666 |
agcatcttgaagctgaaatagaagtacatacattaagtgtcagaaagaatgaatggtaccaatgtcataaaaagaggaacttatggctttaacaatttaa |
13881765 |
T |
|
| Q |
401 |
cctgtttaacaagtttacgtatcatctttcccaagtttatataagagtataattta |
456 |
Q |
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| T |
13881766 |
cctgtttaacaagtttatgtatcatctttcccaagtttatataagggtataattta |
13881821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 162 - 417
Target Start/End: Original strand, 16022434 - 16022693
Alignment:
| Q |
162 |
catattcaatacgatatatgttctaatcgtgtagaa---cacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcata |
258 |
Q |
| |
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|||||||||||||||||||||||| ||| || |||| ||| ||||||| ||| ||||||||||||||||||||| || ||||| ||||||| ||||| |
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| T |
16022434 |
catattcaatacgatatatgttctcatcatgaagaagaacacgagcattttcgtgataaactatatcgacaaactttccaggttttcttgatttctcata |
16022533 |
T |
|
| Q |
259 |
tgcatatagttgaggaagcttattatccatctcatcagtcacagcatcttgaagctgaaatagaagtacacgcattaagtgtcagaaagaatgaatggta |
358 |
Q |
| |
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||||||||||||| | ||||||||||||||||||||| || || || |||||||||||||||| |||||| | ||| ||||||||||||||||| | |
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| T |
16022534 |
tgcatatagttgaagcagcttattatccatctcatcactcgcaacagcttgaagctgaaataggagtacataattgaagggtcagaaagaatgaatgaca |
16022633 |
T |
|
| Q |
359 |
ccaatgtcataaaaagaggaa-cttatggctttaacaatttaacctgtttaacaagttta |
417 |
Q |
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||| | ||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
16022634 |
tcaagcttataaaaagaggaattttatggctttatgcatttaacctgtttaacaagttta |
16022693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 161 - 363
Target Start/End: Complemental strand, 14389688 - 14389488
Alignment:
| Q |
161 |
gcatattcaatacgatatatgttctaatcgtgtagaacacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcatatg |
260 |
Q |
| |
|
||||||||||||| |||||||||| ||| || ||||||| || |||| ||| ||||||||||| ||||||||| |||| ||| ||||||| ||| ||| |
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| T |
14389688 |
gcatattcaatacagtatatgttctcatcatgaagaacacgagaattttcgtgataaactatatcaacaaactttccaagctttcttgatttgtcaaatg |
14389589 |
T |
|
| Q |
261 |
catatagttgaggaagcttattatccatctcatcagtcacagcatcttgaagctgaaatagaagtacacgcattaagtgtcagaaagaatgaatggtacc |
360 |
Q |
| |
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||||||||||| ||||||||||||||||| || || || || || | ||||||| |||| |||||| | || ||||||||||| ||| ||||||||| |
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| T |
14389588 |
catatagttgaagaagcttattatccatcccaccactcgcaacagcgtgaagct--aataagagtacatactttcagtgtcagaaaaaattaatggtacc |
14389491 |
T |
|
| Q |
361 |
aat |
363 |
Q |
| |
|
||| |
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|
| T |
14389490 |
aat |
14389488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 16022307 - 16022378
Alignment:
| Q |
9 |
agttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacacta |
80 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||| | |||||||||||||||||| |||||||||||||| |
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| T |
16022307 |
agttgaatagacagtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacatataacacta |
16022378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 14389836 - 14389758
Alignment:
| Q |
11 |
ttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacactacttaaaact |
89 |
Q |
| |
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| T |
14389836 |
ttgaatagaaagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacatataacactccttaaaact |
14389758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 13856744 - 13856788
Alignment:
| Q |
48 |
gaaataaaccatgttacaaaacatataacactacttaaaactcca |
92 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| |||| |
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| T |
13856744 |
gaaataaaccatgttaccaaacatataacactccttaaaattcca |
13856788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 48707308 - 48707228
Alignment:
| Q |
215 |
taaactatatcgacaaacttttcaagttttattgatttttcatatgcatatagttgaggaagcttattatccatctcatca |
295 |
Q |
| |
|
||||||||||| |||| |||| |||||||| ||||||| | ||||||| ||||||| ||||||||||| ||||||||||| |
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|
| T |
48707308 |
taaactatatcaacaagctttccaagttttcttgatttctggtatgcatttagttgaagaagcttattaaccatctcatca |
48707228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 26200118 - 26200174
Alignment:
| Q |
241 |
ttttattgatttttcatatgcatatagttgaggaagcttattatccatctcatcagt |
297 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| |||| || ||||||||||||||||| |
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|
| T |
26200118 |
ttttcttgattgttcatatgcatatagttgaagaagtttgttatccatctcatcagt |
26200174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 29623198 - 29623333
Alignment:
| Q |
165 |
attcaatacgatatatgttctaatcgtgtagaa---cacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcatatgc |
261 |
Q |
| |
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||||||||||||||||||||| ||| || |||| ||| |||||| || ||||||||||| | ||| || || |||| |||||| |||| |||| |
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| T |
29623198 |
attcaatacgatatatgttctcatcatgaagaagaacacgggcattttcatgataaactatatcaaaaaagcttccagattttcttgattgttcacatgc |
29623297 |
T |
|
| Q |
262 |
atatagttgaggaagcttattatccatctcatcagt |
297 |
Q |
| |
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|||||||||| |||| || ||||||||||||||||| |
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|
| T |
29623298 |
atatagttgaagaagtttgttatccatctcatcagt |
29623333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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