View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18062_low_6 (Length: 393)
Name: NF18062_low_6
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18062_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 51729536 - 51729154
Alignment:
| Q |
1 |
ttttatccgaaaggtctgtgttgagaaactattttctgtatcatcaatcttccatgctccataaatactgctttggtccagatcaggagctgcagaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729536 |
ttttatccgaaaggtctgtgttgagaaactattttctgtatcatcaatcttccatgctccataaatactgctttggtccagatcaggagctgcagaacca |
51729437 |
T |
|
| Q |
101 |
aaaaattctacctcagatgtaaattttgcatgagaaaagtttcactgagaaatctcagttgaagaaaattgaatatgcacaaactaaagaaaaagagaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51729436 |
aaaaattctacctcagatgtaaattttgcatgagaaaagcttcactgagaaatctcagttgaagaaaattgaatatccacaaactaaagaaaaagagaga |
51729337 |
T |
|
| Q |
201 |
aagattac--acaatagtgtcaaaagtaatcaaagaagaattccacatttccatacatagatatgaaacatactttggaagcacgnnnnnnntcctgatt |
298 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51729336 |
aagattacagacaatagtgtcaaaagtaatcaaagaagaattccacatttccatacatagatatgaaacatactttggaagcacgaaaaaaatcctgatt |
51729237 |
T |
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| Q |
299 |
tacagcataactctcatttctttttcgacaactttgggcctcaagtttcaactttcaccacccagtgagcatacctaggttca |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729236 |
tacagcataactctcatttctttttcgacaactttgggcctcaagtttcaactttcaccacccagtgagcatacctaggttca |
51729154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 351434 - 351381
Alignment:
| Q |
1 |
ttttatccgaaaggtctgtgttgagaaactattttctgtatcatcaatcttcca |
54 |
Q |
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|||||||||||| | ||||||||||||||| || ||||||||||||||| |||| |
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| T |
351434 |
ttttatccgaaaaggctgtgttgagaaactgttgtctgtatcatcaatcctcca |
351381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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