View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18062_low_7 (Length: 373)

Name: NF18062_low_7
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18062_low_7
NF18062_low_7
[»] chr5 (6 HSPs)
chr5 (18-363)||(13881061-13881406)
chr5 (18-310)||(13254454-13254759)
chr5 (24-165)||(14367230-14367371)
chr5 (213-326)||(14367070-14367184)
chr5 (248-325)||(13878561-13878638)
chr5 (143-192)||(13139649-13139698)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 13881061 - 13881406
Alignment:
Q  18 ggcctctgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatggaaagtaagaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13881061 ggcctctgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatggaaagtaagaaa 13881160  T
Q  118 atgttgaatgtaagaagggaaaatgtaaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaacgcaatactatcataaatttagtaa 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13881161 atgttgaatgtaagaagggaaaacgtaaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaacgcaatactatcataaatttagtaa 13881260  T
Q  218 cacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccacccatagg 317  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13881261 cacaagctggttttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccaccaatagg 13881360  T
Q  318 ttaacatgtttgttcagtaacacaagttgaatagacagcgcctttg 363  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  13881361 ttaacatgtttgttcagtaacacaagttgaatagacagcgtctttg 13881406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 13254454 - 13254759
Alignment:
Q  18 ggcctctgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatggaaagtaagaag 117  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||  |||     
T  13254454 ggcctatgtatcacctccttcattgttaaggggcatgagtctgttatccagaagtatgtgaatgcagtttctggattctccgtgcatggaaagtcggaaa 13254553  T
Q  118 atgttgaatgtaagaagggaaaatgtaaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaacgcaatactatc-at---------- 206  Q
    || ||||||||||||||||| |  ||||||||||||||||||||||||||| ||||| |||  |||||||||||| ||||| ||||| ||              
T  13254554 atattgaatgtaagaagggagagcgtaaaacgtaagctatccgattaatatcgattagagttaaaagtgattaaaagcaatgctatctatattttgcagg 13254653  T
Q  207 --aaatttagtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgacta 304  Q
      | ||| ||||||||||||   ||||||  ||  ||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||    
T  13254654 taagattcagtaacacaagcatgttttatcgtaaaatgagaccatctgcttccaatatctgaactttctgcaatccaatgatagtcgacctaaatgacta 13254753  T
Q  305 ttccac 310  Q
    ||||||    
T  13254754 ttccac 13254759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 14367371 - 14367230
Alignment:
Q  24 tgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatggaaagtaagaagatgttg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| ||||  | |||    
T  14367371 tgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgagaacgcagtctctggattccctgtgcatggaaagtcagaaattattg 14367272  T
Q  124 aatgtaagaagggaaaatgtaaaacgtaagctatccgattaa 165  Q
    |||||||||||||| |  |||||  |||||||||||||||||    
T  14367271 aatgtaagaagggatagcgtaaactgtaagctatccgattaa 14367230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 326
Target Start/End: Complemental strand, 14367184 - 14367070
Alignment:
Q  213 agtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatcc-aatgatagtcaatctaaacgactattccacc 311  Q
    |||||||||||||| ||||||  ||| ||||||||||||||| ||||||||| ||||| ||| || || |||  || ||||||||||   |||||||||     
T  14367184 agtaacacaagctggttttatattagaatgagaccatctgctcccaatatctgaacttgctgtaaaccaaatagtaatcaatctaaattcctattccact 14367085  T
Q  312 cataggttaacatgt 326  Q
    || ||||||||||||    
T  14367084 cacaggttaacatgt 14367070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 13878561 - 13878638
Alignment:
Q  248 atctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccacccataggttaacatg 325  Q
    ||||||| ||||||||||||||| |||||| ||||||||| |||||||| |   |||||| || || |||||||||||    
T  13878561 atctgctcccaatatcttaacttgctgcaaaccaatgataatcaatctatatacctattcaactcacaggttaacatg 13878638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 13139649 - 13139698
Alignment:
Q  143 taaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaa 192  Q
    |||| |||||| |||| |||||||||||||||||||  ||||||||||||    
T  13139649 taaaccgtaagttatctgattaatattgattaaagtgaaaagtgattaaa 13139698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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