View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18062_low_8 (Length: 364)
Name: NF18062_low_8
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18062_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 43016099 - 43016441
Alignment:
| Q |
15 |
caaaggacggtggtgtttagttagtcacatcacatgtatcttgcatcacagcaacatcacagattgaaaaatgaccagaagcattattttggctctatat |
114 |
Q |
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| T |
43016099 |
caaaggacggtggtgtttagttagtcacatcacatgtatcttgcatcacagcaacatcacagattgaaaaatgaccagaagcattattttggctctatat |
43016198 |
T |
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| Q |
115 |
tgctatagaatgaaattaacaaatgagttttcgtgaaggcttttattgaattcctttgtagattccactcttgatcataattttatacctatgaggtgta |
214 |
Q |
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| T |
43016199 |
tgctatagaatgaaattaacaaatgagttttcgtgaaggcttttattgaattcctttgtagattccactcttgatcataattctatacctatgaggtgta |
43016298 |
T |
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| Q |
215 |
caaatagtgtattgtatttatttatttatcagatgttactgaaaatagtttgtatatagcattaccgtaatgctatatctatgaggtgtacaacatatga |
314 |
Q |
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| T |
43016299 |
caaatagtgtattgtatttatttat----cag---ttactgaaaatagtttgtatatagcattaccgtaatgctatatctatgaggtgtacaacatatga |
43016391 |
T |
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| Q |
315 |
atgccattacgtatgaactttgaagtaatcctatgttgtaacttattgac |
364 |
Q |
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| T |
43016392 |
atgccattacgtatgaactttgaagtaatcctatgttgtaacttattgac |
43016441 |
T |
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