View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18062_low_9 (Length: 363)
Name: NF18062_low_9
Description: NF18062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18062_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 32640358 - 32640027
Alignment:
| Q |
1 |
catacacttttatgttttcatatcttgacaatgactttctaattcctttacacaattatttggaaaactatttttcttgtttaccatgattttattaagg |
100 |
Q |
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| T |
32640358 |
catacacttttatgttttcatatcttgacaatgactttctaattccgttacacaattatttggaaaactatttttcttgtttaccatgattttattaagg |
32640259 |
T |
|
| Q |
101 |
atttcacaactaattcaa-aaaactaccttaatttcagtgtgttagagaaatcctaattacaaaccctcaacatacaaatgataaaaccatatgtggtct |
199 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32640258 |
atttcacaactaattcaaaaaaactacctaaatttcagtgtgttagagaaatcctaattacaaaccctcaacctacaaatgataaaaccatatgtggtct |
32640159 |
T |
|
| Q |
200 |
aacggtattgagtttatattactannnnnnncgttttcccacttgacctctataaatgcaccacaccatttatccaaagtctcaatcatttttccatacc |
299 |
Q |
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| T |
32640158 |
aacggtattgagtttatattactatttttttcgttttctcacttgacctctataaatacaccataccattcatccaaattctcaatcatttttccatacc |
32640059 |
T |
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| Q |
300 |
attatacttcgtttgcctcatgcctgcttctt |
331 |
Q |
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|||||||||| ||||| ||||||||||||||| |
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| T |
32640058 |
attatacttcttttgcatcatgcctgcttctt |
32640027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 32635349 - 32635433
Alignment:
| Q |
231 |
cgttttcccacttgacctctataaatgcaccacaccatttatccaaagtctcaatcatttttccataccattatacttcgtttgc |
315 |
Q |
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||||||| |||||||||||||||||| ||||| |||||| ||||||| || |||||||||| |||||||||||||||| ||||| |
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| T |
32635349 |
cgttttctcacttgacctctataaatacaccataccattcatccaaattcaaaatcattttttcataccattatacttcttttgc |
32635433 |
T |
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