View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18063_low_1 (Length: 300)

Name: NF18063_low_1
Description: NF18063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18063_low_1
NF18063_low_1
[»] chr7 (6 HSPs)
chr7 (19-290)||(24558601-24558871)
chr7 (93-173)||(26853131-26853211)
chr7 (96-157)||(24622639-24622700)
chr7 (109-160)||(23472381-23472432)
chr7 (95-173)||(23681801-23681879)
chr7 (110-174)||(2016861-2016925)
[»] chr8 (3 HSPs)
chr8 (105-173)||(7663989-7664057)
chr8 (126-225)||(5654624-5654721)
chr8 (109-149)||(6863085-6863125)
[»] chr3 (1 HSPs)
chr3 (94-174)||(42347341-42347421)
[»] chr4 (3 HSPs)
chr4 (93-166)||(34113660-34113733)
chr4 (133-170)||(32814536-32814573)
chr4 (137-174)||(43405202-43405239)
[»] chr1 (4 HSPs)
chr1 (109-166)||(49920330-49920387)
chr1 (109-174)||(10849827-10849890)
chr1 (110-173)||(25954082-25954145)
chr1 (104-163)||(45806879-45806938)
[»] chr5 (1 HSPs)
chr5 (93-161)||(2818977-2819045)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 24558871 - 24558601
Alignment:
Q  19 tgaatatcatgtgctaattcgattagaccaattttatggtacacaagtgagaaattttttgtattataggtaatttagtttttattattagatcaataaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  24558871 tgaatatcatgtgctaattcgattagaccaattttatggtacacaagtgagaaaagttttgtattataggtaatttagtttttattattagatcaataaa 24558772  T
Q  119 tctctccattaaactaaatgagatatgatgtaatttattgatcaaatggtgaaaagtacttgtgtatagagtgtaagacaattttatttgtgcatgttaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||    
T  24558771 tctctccattaaactaaatgagatatgatgtaatttattgatcaaatggtaaaaagtacttgtgtat--cgtgtaagacaattttatttgtgcatgttaa 24558674  T
Q  219 acaaagtagttcgtttaaccctattcttttctaattggttagaaatttttgga-tttactcttctcacctatg 290  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  24558673 acaaagtagttcgtttaaccatattcttttctaattggtctgaaatttttggattttactcttctcacctatg 24558601  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 26853211 - 26853131
Alignment:
Q  93 ttagtttttattattagatcaataaatctctccattaaactaaatgagatatgatgtaatttattgatcaaatggtgaaaa 173  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||| ||| ||||| | ||||| ||| || ||||||||    
T  26853211 ttagtttttattattagattaataaatcttaccattaaactaaatgatataagatgttacttattaatccaacggtgaaaa 26853131  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 24622700 - 24622639
Alignment:
Q  96 gtttttattattagatcaataaatctctccattaaactaaatgagatatgatgtaatttatt 157  Q
    |||| |||||||| |||||||||| |   ||||||| |||||||||||||||||||||||||    
T  24622700 gtttgtattattaaatcaataaattttatcattaaattaaatgagatatgatgtaatttatt 24622639  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 23472432 - 23472381
Alignment:
Q  109 gatcaataaatctctccattaaactaaatgagatatgatgtaatttattgat 160  Q
    |||||||||||||| ||||||||  |||||| |||||||| |||||||||||    
T  23472432 gatcaataaatctcaccattaaatcaaatgatatatgatgaaatttattgat 23472381  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 23681801 - 23681879
Alignment:
Q  95 agtttttattattagatcaataaatctctccattaaactaaatgagatatgatgtaatttattgatcaaatggtgaaaa 173  Q
    ||||||||||||| ||||||||||| ||   ||||||  |||||| ||||||||  ||||| ||||||||| |||||||    
T  23681801 agtttttattattggatcaataaatatcattattaaatcaaatgaaatatgatgacatttaatgatcaaatagtgaaaa 23681879  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 2016925 - 2016861
Alignment:
Q  110 atcaataaatctctccattaaactaaatgagatatgatgtaatttattgatcaaatggtgaaaag 174  Q
    |||||||||| || |||||||| || || ||||||||||| ||||||||||  |||| |||||||    
T  2016925 atcaataaatttcaccattaaaatagattagatatgatgtgatttattgattcaatgatgaaaag 2016861  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 7664057 - 7663989
Alignment:
Q  105 attagatcaataaatctctccattaaactaaatgagatatgatgtaatttattgatcaaatggtgaaaa 173  Q
    |||||||||| ||||||| |||||||| ||||||| ||||||||||||||||||||  |||||| ||||    
T  7664057 attagatcaaaaaatctccccattaaattaaatgaaatatgatgtaatttattgatataatggtaaaaa 7663989  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 5654721 - 5654624
Alignment:
Q  126 attaaactaaatgagatatgatgtaatttattgatcaaatggtgaaaagtacttgtgtatagagtgtaagacaattttatttgtgcatgttaaacaaagt 225  Q
    |||||| ||||||||||||||| | | ||||||||| ||| ||||||| ||||  |||| | | |||| ||| ||||||||| ||||||||| |||||||    
T  5654721 attaaattaaatgagatatgatatgacttattgatccaatagtgaaaaatact--tgtagataatgtaggaccattttatttatgcatgttagacaaagt 5654624  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 6863085 - 6863125
Alignment:
Q  109 gatcaataaatctctccattaaactaaatgagatatgatgt 149  Q
    |||||||||||||| |||||||| ||||||| |||||||||    
T  6863085 gatcaataaatctcaccattaaattaaatgaaatatgatgt 6863125  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 42347341 - 42347421
Alignment:
Q  94 tagtttttattattagatcaataaatctctccattaaactaaatgagatatgatgtaatttattgatcaaatggtgaaaag 174  Q
    |||||||||||||| ||||||||||||||  ||||||| || |||||||||||||  | ||||| ||| ||||||||||||    
T  42347341 tagtttttattattggatcaataaatctcatcattaaattatatgagatatgatgcgacttattaatccaatggtgaaaag 42347421  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 34113660 - 34113733
Alignment:
Q  93 ttagtttttattattagatcaataaatctctccattaaactaaatgagatatgatgtaatttattgatcaaatg 166  Q
    ||||||||||| |||  ||||||||||||| | |||||| ||||||| ||||||||| | ||||||||||||||    
T  34113660 ttagtttttatcattgaatcaataaatctcactattaaattaaatgatatatgatgtgacttattgatcaaatg 34113733  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 32814536 - 32814573
Alignment:
Q  133 taaatgagatatgatgtaatttattgatcaaatggtga 170  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  32814536 taaatgaaatatgatgtaatttattgatctaatggtga 32814573  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 43405202 - 43405239
Alignment:
Q  137 tgagatatgatgtaatttattgatcaaatggtgaaaag 174  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  43405202 tgagatgtgatgtaatttattgatctaatggtgaaaag 43405239  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 49920330 - 49920387
Alignment:
Q  109 gatcaataaatctctccattaaactaaatgagatatgatgtaatttattgatcaaatg 166  Q
    |||||||||||| | ||||||||  |||||||||||||||||||||||||||| ||||    
T  49920330 gatcaataaatcacaccattaaatcaaatgagatatgatgtaatttattgatccaatg 49920387  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 10849890 - 10849827
Alignment:
Q  109 gatcaataaatctctccattaaactaaatgagatatgatgtaatttattgatcaaatggtgaaaag 174  Q
    |||||||||||||||  |||||| |||||| | |||||||||| ||||||||||||| ||||||||    
T  10849890 gatcaataaatctct--attaaattaaatgtgttatgatgtaacttattgatcaaatagtgaaaag 10849827  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 25954082 - 25954145
Alignment:
Q  110 atcaataaatctctccattaaactaaatgagatatgatgtaatttattgatcaaatggtgaaaa 173  Q
    |||||||||||||  || |||| |||| || ||||||| |||||| ||||||||||||||||||    
T  25954082 atcaataaatctcatcaataaattaaaagaaatatgatataattttttgatcaaatggtgaaaa 25954145  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 45806938 - 45806879
Alignment:
Q  104 tattagatcaataaatctctccattaaactaaatgagatatgatgtaatttattgatcaa 163  Q
    |||||||||||||||||||  ||||||| ||||| | | ||||||| |||||||||||||    
T  45806938 tattagatcaataaatctcatcattaaattaaataaaacatgatgtgatttattgatcaa 45806879  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 2818977 - 2819045
Alignment:
Q  93 ttagtttttattattagatcaataaatctctccattaaactaaatgagatatgatgtaatttattgatc 161  Q
    |||||||| || ||| |||||||||||||| |||||| | ||||||| |||||||| || |||||||||    
T  2818977 ttagttttcatcattggatcaataaatctcaccattagattaaatgaaatatgatgcaacttattgatc 2819045  T

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