View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18063_low_2 (Length: 285)
Name: NF18063_low_2
Description: NF18063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18063_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 8892887 - 8893147
Alignment:
| Q |
15 |
atattcttccatatcttagtcaaatgaaaagattacacaattataatcatgcaattcagatcactggatcttataactagacggttcgtgttcctactta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8892887 |
atattcttccatatcttagtcaaatgaaaatattacacaattataatcatgcaattcagatcactggatcttataactagacgattcgtgttcctactta |
8892986 |
T |
|
| Q |
115 |
gatacaaaatattaaacttgatcataatcgaatgatccaaattattcgatggcatattttccaattacatgaaccaaaattcatactctattttgcatgt |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8892987 |
gatacaaaatattaaatttgatcataatcgaatgatccaaattattcgattgcatattttccaattacatgaaccaaaattcatactctattttgcatgt |
8893086 |
T |
|
| Q |
215 |
ttgaaattaagaatttgagttcaaaatgtttgcattcaatgcaacatttcatacggttcat |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8893087 |
ttgaaattaagaatttgagttcaaaatgtttgcattcaatgcaacatttcatacggttcat |
8893147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University