View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18064_high_10 (Length: 277)
Name: NF18064_high_10
Description: NF18064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18064_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 7967404 - 7967154
Alignment:
| Q |
10 |
attatactctgctaatcacttaaactcaaatctgattcatttgatnnnnnnntgtgcactatacgtaagaaaggcaacatcttcttcctgacactaaaca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7967404 |
attatactctgctaatcacttaaactcaaatctgattcatttgataaaaaa-tgtgcactatacgtaagaaaggcaacatcttcttcctgacactaaaca |
7967306 |
T |
|
| Q |
110 |
atgacgaacactgtctcaaccctacacttctcaattccatcaaatccactctccaccgtgtccgtcaacaagccaccacttcctccgtcctcatcaccat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7967305 |
atgacgaacactgtctcaaccctacacttctcaattccatcaaatccactctccaccgtgtccgtcaacaagccaccacttcctccgtcctcatcaccat |
7967206 |
T |
|
| Q |
210 |
cgcacatgacaaattcttctccaacggctacgacatcgactgggcacaatct |
261 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
7967205 |
cgcacacgacaaattcttctccaacggctatgacatcgattgggcacaatct |
7967154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 76 - 258
Target Start/End: Original strand, 7973547 - 7973732
Alignment:
| Q |
76 |
aagaaaggcaacatcttcttcctgacactaaac---aatgacgaacactgtctcaaccctacacttctcaattccatcaaatccactctccaccgtgtcc |
172 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||| | || || |||||| |||||||||| |||||||||||||| ||||||||| | || |||||||||| |
|
|
| T |
7973547 |
aagaaaggaaacatcttcatcctaacactaaccggcaacgatgaacaccgtctcaaccccacacttctcaattcaatcaaatccgcccttcaccgtgtcc |
7973646 |
T |
|
| Q |
173 |
gtcaacaagccaccacttcctccgtcctcatcaccatcgcacatgacaaattcttctccaacggctacgacatcgactgggcacaa |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7973647 |
gtcaacaagccaccacctcctccgtcctcatcaccaccgcacacggaaaattcttctccaacggttacgacatcgactgggcacaa |
7973732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 1068647 - 1068693
Alignment:
| Q |
162 |
ccaccgtgtccgtcaacaagccaccacttcctccgtcctcatcacca |
208 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
1068647 |
ccaccatgtccgtcaacaagccaccacctcctccgccctcatcacca |
1068693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 55819722 - 55819682
Alignment:
| Q |
168 |
tgtccgtcaacaagccaccacttcctccgtcctcatcacca |
208 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
55819722 |
tgtccgtcaacaagccaccacctcctccgccctcatcacca |
55819682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University