View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18064_high_11 (Length: 257)
Name: NF18064_high_11
Description: NF18064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18064_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 29464135 - 29463879
Alignment:
| Q |
1 |
aatctagtttgatagatgtgcacaagttgactacttggacagacgagagtttatgtcattgatcaatagaacctatttgcaagattacataaagtttata |
100 |
Q |
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| T |
29464135 |
aatctagtttgatagatgtgcacaagttgactacttggacagacgagagtttatgtcattgatcaatagcacctatttgctagattacataaagtttata |
29464036 |
T |
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| Q |
101 |
tggagtttatttcattgatttggaccaaaaacaaatttaaaaaacctaggagaannnnnnnggttgtccctctagctttcaatgtaattggaagtctagt |
200 |
Q |
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| T |
29464035 |
tggagtttatttcattgatttggaccaagtgcaaatttagaaaacctagcagaatttttttggttgtccctctagctttaaatgtaattggaagtctagt |
29463936 |
T |
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| Q |
201 |
tttttcattgccggcattttggttccagttgctgttggaattctggtctgcattata |
257 |
Q |
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| T |
29463935 |
tttttcatcgcaggcattttggttccagttgctgttggaattctggtctgcattata |
29463879 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 8674826 - 8674917
Alignment:
| Q |
1 |
aatctagtttgatagatgtgcacaagttgactacttggacagacgagagtttatgtcattgatcaatagaacctatttgcaagattacataaagt |
95 |
Q |
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| T |
8674826 |
aatctagtttgatagatgtgcacaagttcactacttggatggaggacaatttatgtcat---taaatagagcctattttctagatgacataaagt |
8674917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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