View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18064_high_2 (Length: 484)
Name: NF18064_high_2
Description: NF18064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18064_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 85 - 449
Target Start/End: Complemental strand, 4760584 - 4760219
Alignment:
| Q |
85 |
caagttcatacttatttatttatttttattacttttgtgacttgaagatcaactcaagcccatatgaagatggatggatgatcaaaataaagccaagtga |
184 |
Q |
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| T |
4760584 |
caagttcatacttatttatttatttttattacttttgtgacttgaagatcaactcaagcccatatgaagatggatggatgatcaaaataaagccaagtga |
4760485 |
T |
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| Q |
185 |
tccatctgaattagaatccttgttgggtgcaaaggagtacacaaaattttgtgaggaagaagatgctgcacattgaaattaa-tttcaatatatgggact |
283 |
Q |
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| T |
4760484 |
tccatctgaattagaatccttgttgggtgcaaaggagtacacaaaattttgtgaggaagaagatgctgcacattgaaattaattttcaatatatgggact |
4760385 |
T |
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| Q |
284 |
gactcnnnnnnnatatatgtactatgatattgttatctactttcttcaagtgcaatagaattgcttcaagttgttattgttttttccttgctattattgt |
383 |
Q |
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| T |
4760384 |
gactctttttttatatatgtactatgatattgttatctactttcttcaagtgcaatagaattgcttcaagttgttattgttctttccttgctactattgt |
4760285 |
T |
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| Q |
384 |
cattgttaccgacacttcagtgtgtcagtctttctatctagtcatgtaattaagaaggaaatttct |
449 |
Q |
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| T |
4760284 |
cattgttaccgacacttcagtgtgtcagtctttctatctagtcatgtaattaagaaggaaatttct |
4760219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 4760698 - 4760614
Alignment:
| Q |
1 |
tgaaaataagctgaaaacaacttacctcaaatagttacacaaatgtttatgtcatgacttatgaaataagtcaacatttaatgtc |
85 |
Q |
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| T |
4760698 |
tgaaaataagctgaaaacaacttacctcaaatagttacacagatgtttatgtcatgacttatgaaataagtcaacatttaatgtc |
4760614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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