View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18064_high_6 (Length: 359)

Name: NF18064_high_6
Description: NF18064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18064_high_6
NF18064_high_6
[»] chr7 (40 HSPs)
chr7 (91-219)||(28065926-28066055)
chr7 (89-219)||(12082599-12082731)
chr7 (89-219)||(11824357-11824489)
chr7 (89-219)||(8726618-8726750)
chr7 (91-219)||(16886895-16887026)
chr7 (89-219)||(18146631-18146763)
chr7 (89-218)||(18237238-18237369)
chr7 (89-218)||(30360192-30360323)
chr7 (89-218)||(41217284-41217415)
chr7 (89-201)||(27318254-27318368)
chr7 (95-193)||(31267070-31267169)
chr7 (89-218)||(40592408-40592539)
chr7 (89-218)||(47268585-47268716)
chr7 (102-219)||(2355977-2356096)
chr7 (89-203)||(20379103-20379218)
chr7 (89-204)||(21615176-21615294)
chr7 (89-218)||(26603606-26603737)
chr7 (89-218)||(48221143-48221274)
chr7 (89-193)||(7414435-7414540)
chr7 (145-219)||(12309997-12310072)
chr7 (89-219)||(149763-149888)
chr7 (94-184)||(41935796-41935885)
chr7 (145-219)||(7066459-7066534)
chr7 (89-176)||(21615340-21615429)
chr7 (90-160)||(18146494-18146565)
chr7 (89-176)||(8726798-8726887)
chr7 (89-176)||(13798867-13798956)
chr7 (89-176)||(40592272-40592361)
chr7 (89-176)||(47268449-47268538)
chr7 (145-204)||(7061968-7062027)
chr7 (110-176)||(39477625-39477692)
chr7 (131-219)||(1321690-1321779)
chr7 (89-176)||(18237099-18237189)
chr7 (89-135)||(11824021-11824067)
chr7 (89-136)||(2355820-2355867)
chr7 (149-204)||(26926245-26926300)
chr7 (89-136)||(26603834-26603881)
chr7 (89-136)||(30360076-30360123)
chr7 (89-136)||(48221363-48221410)
chr7 (89-134)||(20379306-20379351)
[»] chr4 (42 HSPs)
chr4 (90-219)||(20759539-20759670)
chr4 (90-219)||(20765930-20766061)
chr4 (89-219)||(3392977-3393109)
chr4 (89-219)||(32938304-32938438)
chr4 (89-193)||(42420715-42420820)
chr4 (89-204)||(21711231-21711349)
chr4 (89-219)||(24606423-24606557)
chr4 (89-218)||(33163947-33164078)
chr4 (89-204)||(31931254-31931371)
chr4 (102-204)||(18412281-18412384)
chr4 (91-202)||(31323848-31323961)
chr4 (106-219)||(1225850-1225965)
chr4 (89-219)||(23124934-23125058)
chr4 (91-219)||(44100019-44100150)
chr4 (89-218)||(46816929-46817060)
chr4 (89-219)||(17210938-17211071)
chr4 (89-204)||(49063651-49063769)
chr4 (89-176)||(27759186-27759275)
chr4 (89-176)||(49063516-49063605)
chr4 (89-176)||(14331285-14331374)
chr4 (115-204)||(20779287-20779379)
chr4 (89-176)||(21711091-21711180)
chr4 (89-176)||(31825193-31825282)
chr4 (89-176)||(31825439-31825528)
chr4 (99-195)||(13850431-13850529)
chr4 (107-176)||(24606307-24606377)
chr4 (89-176)||(17210802-17210891)
chr4 (144-219)||(3510831-3510907)
chr4 (107-202)||(13865965-13866061)
chr4 (89-204)||(14331112-14331238)
chr4 (89-172)||(20779381-20779466)
chr4 (89-143)||(27759321-27759375)
chr4 (89-176)||(20779518-20779607)
chr4 (89-160)||(23125130-23125201)
chr4 (99-176)||(3392851-3392930)
chr4 (150-218)||(31825032-31825101)
chr4 (91-136)||(33164165-33164210)
chr4 (144-219)||(17291684-17291760)
chr4 (144-219)||(25144226-25144301)
chr4 (143-202)||(11866561-11866620)
chr4 (149-219)||(12587381-12587452)
chr4 (172-219)||(24074863-24074911)
[»] chr2 (33 HSPs)
chr2 (89-204)||(18878185-18878301)
chr2 (89-219)||(21557160-21557293)
chr2 (89-204)||(20147795-20147911)
chr2 (89-202)||(27650854-27650968)
chr2 (89-219)||(17796505-17796637)
chr2 (89-219)||(16706642-16706776)
chr2 (93-219)||(36194608-36194736)
chr2 (89-218)||(22492948-22493079)
chr2 (89-218)||(42119689-42119820)
chr2 (99-219)||(6901651-6901775)
chr2 (89-176)||(16706499-16706588)
chr2 (90-219)||(26617880-26618012)
chr2 (89-204)||(32734325-32734441)
chr2 (89-218)||(12968700-12968831)
chr2 (89-218)||(29906258-29906389)
chr2 (89-207)||(28277297-28277420)
chr2 (89-204)||(29110842-29110952)
chr2 (89-195)||(40500970-40501078)
chr2 (89-176)||(29110707-29110796)
chr2 (89-202)||(42241515-42241631)
chr2 (89-176)||(42241677-42241766)
chr2 (111-193)||(5306904-5306987)
chr2 (89-144)||(27651251-27651306)
chr2 (145-219)||(28747350-28747425)
chr2 (89-176)||(29906122-29906211)
chr2 (89-136)||(12968920-12968967)
chr2 (89-136)||(17796737-17796784)
chr2 (145-219)||(20988255-20988330)
chr2 (145-176)||(6899620-6899651)
chr2 (110-176)||(16706386-16706453)
chr2 (89-136)||(22492816-22492863)
chr2 (115-176)||(20147687-20147749)
chr2 (91-136)||(42119576-42119621)
[»] chr6 (19 HSPs)
chr6 (91-219)||(18744362-18744492)
chr6 (89-219)||(3097906-3098038)
chr6 (89-204)||(14483229-14483345)
chr6 (89-218)||(800843-800974)
chr6 (103-219)||(28051092-28051210)
chr6 (89-219)||(20243848-20243981)
chr6 (89-219)||(22137832-22137965)
chr6 (89-195)||(5570812-5570920)
chr6 (107-219)||(24559566-24559680)
chr6 (110-218)||(35060369-35060479)
chr6 (89-136)||(28050935-28050982)
chr6 (89-176)||(800706-800795)
chr6 (94-219)||(14095326-14095454)
chr6 (145-219)||(5973423-5973498)
chr6 (89-194)||(19242478-19242584)
chr6 (89-136)||(35060578-35060625)
chr6 (105-160)||(14483391-14483447)
chr6 (145-193)||(21865317-21865365)
chr6 (172-219)||(26856447-26856495)
[»] chr5 (30 HSPs)
chr5 (89-204)||(12742388-12742504)
chr5 (89-204)||(12805206-12805322)
chr5 (89-204)||(19747733-19747849)
chr5 (89-225)||(36312349-36312487)
chr5 (89-204)||(28717749-28717866)
chr5 (89-219)||(10975489-10975621)
chr5 (89-219)||(15798491-15798623)
chr5 (89-218)||(3458508-3458639)
chr5 (91-219)||(16418495-16418626)
chr5 (89-204)||(25361010-25361127)
chr5 (89-204)||(7081962-7082080)
chr5 (89-218)||(19400035-19400166)
chr5 (89-218)||(40009200-40009331)
chr5 (90-219)||(2598891-2599023)
chr5 (89-202)||(17367156-17367278)
chr5 (89-219)||(33370321-33370458)
chr5 (89-171)||(23229195-23229278)
chr5 (91-204)||(8435710-8435825)
chr5 (89-176)||(33370187-33370276)
chr5 (89-136)||(4113555-4113602)
chr5 (93-132)||(17195970-17196009)
chr5 (89-176)||(7081827-7081916)
chr5 (89-136)||(3458355-3458402)
chr5 (89-136)||(19399895-19399942)
chr5 (145-204)||(21290353-21290412)
chr5 (106-160)||(36312553-36312608)
chr5 (152-194)||(34595063-34595105)
chr5 (145-176)||(12742308-12742339)
chr5 (145-176)||(12805127-12805158)
chr5 (89-136)||(40009079-40009126)
[»] chr1 (45 HSPs)
chr1 (89-219)||(21760769-21760902)
chr1 (89-204)||(48707333-48707450)
chr1 (89-219)||(21485035-21485167)
chr1 (89-218)||(49599265-49599396)
chr1 (89-219)||(27259603-27259734)
chr1 (89-219)||(5764877-5765011)
chr1 (89-218)||(46181955-46182086)
chr1 (89-188)||(3658331-3658431)
chr1 (89-218)||(41875291-41875422)
chr1 (89-218)||(48568811-48568942)
chr1 (89-201)||(18842110-18842225)
chr1 (89-195)||(17696722-17696829)
chr1 (109-218)||(27035719-27035830)
chr1 (91-219)||(34335877-34336008)
chr1 (94-204)||(18169701-18169814)
chr1 (89-219)||(25803967-25804098)
chr1 (89-218)||(50068661-50068792)
chr1 (89-176)||(48568994-48569083)
chr1 (89-204)||(30310242-30310360)
chr1 (89-186)||(45688827-45688925)
chr1 (89-176)||(3658195-3658284)
chr1 (89-176)||(39224793-39224882)
chr1 (89-163)||(26089013-26089088)
chr1 (89-177)||(18169561-18169651)
chr1 (146-219)||(26793039-26793113)
chr1 (89-176)||(41875468-41875557)
chr1 (89-176)||(46182133-46182222)
chr1 (89-164)||(47488478-47488554)
chr1 (89-144)||(15471241-15471296)
chr1 (111-176)||(49599447-49599513)
chr1 (145-219)||(12026265-12026340)
chr1 (89-176)||(21485214-21485305)
chr1 (89-136)||(50068885-50068932)
chr1 (150-204)||(39224614-39224668)
chr1 (90-136)||(39224699-39224745)
chr1 (89-176)||(5764741-5764830)
chr1 (163-204)||(27799405-27799446)
chr1 (89-133)||(17696579-17696623)
chr1 (89-159)||(27799292-27799364)
chr1 (144-219)||(31452150-31452226)
chr1 (89-136)||(11821528-11821575)
chr1 (89-136)||(47488646-47488693)
chr1 (89-134)||(12025848-12025894)
chr1 (172-219)||(16532442-16532490)
chr1 (144-219)||(19262778-19262854)
[»] scaffold0027 (1 HSPs)
scaffold0027 (89-219)||(36336-36468)
[»] chr3 (44 HSPs)
chr3 (89-218)||(48087958-48088089)
chr3 (89-195)||(1639030-1639138)
chr3 (89-218)||(25576991-25577122)
chr3 (89-219)||(33449542-33449674)
chr3 (89-218)||(42381958-42382089)
chr3 (89-218)||(42382738-42382869)
chr3 (89-219)||(774738-774869)
chr3 (89-204)||(37281137-37281255)
chr3 (89-218)||(39417354-39417485)
chr3 (89-193)||(17370487-17370593)
chr3 (102-218)||(42950421-42950539)
chr3 (89-219)||(29635322-29635455)
chr3 (89-193)||(47065374-47065479)
chr3 (89-219)||(15636711-15636843)
chr3 (89-219)||(6464745-6464879)
chr3 (91-219)||(14265096-14265227)
chr3 (89-219)||(19236979-19237103)
chr3 (89-204)||(36721779-36721897)
chr3 (102-218)||(53827097-53827215)
chr3 (89-204)||(44835903-44836019)
chr3 (89-219)||(7953888-7954022)
chr3 (89-194)||(6753889-6753997)
chr3 (89-176)||(39417538-39417627)
chr3 (89-202)||(55391189-55391307)
chr3 (99-159)||(13626533-13626595)
chr3 (89-176)||(19236838-19236927)
chr3 (89-176)||(25577170-25577259)
chr3 (89-176)||(37281001-37281090)
chr3 (89-136)||(8633884-8633931)
chr3 (89-176)||(6464927-6465016)
chr3 (89-176)||(6753753-6753842)
chr3 (89-176)||(36721940-36722029)
chr3 (89-176)||(48088136-48088225)
chr3 (89-175)||(7953752-7953840)
chr3 (145-204)||(17267715-17267774)
chr3 (89-176)||(8633977-8634066)
chr3 (144-204)||(50343031-50343091)
chr3 (89-136)||(33449778-33449825)
chr3 (89-136)||(42381820-42381867)
chr3 (89-136)||(42382600-42382647)
chr3 (89-136)||(53827322-53827369)
chr3 (89-139)||(47065236-47065286)
chr3 (145-204)||(8633775-8633834)
chr3 (145-176)||(15636635-15636666)
[»] chr8 (20 HSPs)
chr8 (89-204)||(22843755-22843872)
chr8 (89-219)||(28706541-28706673)
chr8 (99-219)||(12505120-12505242)
chr8 (91-219)||(16575375-16575507)
chr8 (102-204)||(43640434-43640537)
chr8 (90-184)||(14998553-14998648)
chr8 (89-204)||(43692818-43692936)
chr8 (145-219)||(8751507-8751582)
chr8 (89-204)||(24630305-24630423)
chr8 (89-164)||(33799993-33800069)
chr8 (89-175)||(43692683-43692771)
chr8 (145-204)||(40414350-40414409)
chr8 (145-218)||(27783186-27783260)
chr8 (91-219)||(12785618-12785749)
chr8 (89-174)||(16575236-16575323)
chr8 (150-219)||(3589653-3589723)
chr8 (89-136)||(28706765-28706812)
chr8 (89-136)||(33800157-33800204)
chr8 (89-136)||(43640634-43640681)
chr8 (144-219)||(31172215-31172291)
[»] scaffold0121 (2 HSPs)
scaffold0121 (89-192)||(5017-5121)
scaffold0121 (89-157)||(4879-4948)
[»] scaffold0004 (2 HSPs)
scaffold0004 (102-219)||(39561-39682)
scaffold0004 (145-176)||(39483-39514)
[»] scaffold0294 (1 HSPs)
scaffold0294 (153-219)||(746-813)
[»] scaffold1763 (1 HSPs)
scaffold1763 (89-136)||(7-54)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 28065926 - 28066055
Alignment:
Q  91 aagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagattttgcatgtttatgttgtagttttgagttttaaggtttatgtataa 190  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  28065926 aagaaatgatacaatgttacatgtaaatgacttatattgtttaattgtttagattttgcatgtttatgttgtagtaatgagttttagggtttatgtataa 28066025  T
Q  191 tttgccctccaagt-tttgattaaatgttt 219  Q
    ||||| || ||||| |||||||||||||||    
T  28066026 tttgcacttcaagtgtttgattaaatgttt 28066055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 12082599 - 12082731
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  12082599 gcaagaaatgatacaatgttacatgtaaattacttatattgcttaattgtttagatgtttgcatgtttatgttgtagttatgagttttatggtttatgta 12082698  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||| |||||||| |||||| ||||||||    
T  12082699 taatttgcactccaagtgtttgatgaaatgttt 12082731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 11824357 - 11824489
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  11824357 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattgtttagatgtttgcatgtttatgttgtagttatgagttttagggtttatgta 11824456  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||||  |||| || |||||| ||||||||    
T  11824457 taatttgcagtccaggtgtttgataaaatgttt 11824489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 8726750 - 8726618
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||| |||||||||||||||||| ||||||||| ||| ||||||    
T  8726750 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattgcttagatgttttcatgtttatgttgtagttatgagttttagggtatatgta 8726651  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||| || ||||| |||| ||||||||||    
T  8726650 taatttgcacttcaagtgtttgcttaaatgttt 8726618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 16887026 - 16886895
Alignment:
Q  91 aagaaatgatacaatg-ttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtat 188  Q
    |||||||||||||||  ||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  16887026 aagaaatgatacaatacttacatgtaaatgccttatatttcttaattgtttagatgtttgcatgtttatgttgtagttttgagttttagggtttatgtat 16886927  T
Q  189 aatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||| |||||||| |||||| ||||||||    
T  16886926 aatttgcactccaagtgtttgatgaaatgttt 16886895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 18146631 - 18146763
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||| ||| ||| ||    
T  18146631 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatatagatgtttgcatgtttatattgtagttatgagttttagggtatatcta 18146730  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    || ||||  |||||||| |||||| ||||||||    
T  18146731 tattttgaactccaagtgtttgataaaatgttt 18146763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 18237238 - 18237369
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| || ||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  18237238 gcaagatataatacaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 18237337  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  18237338 taatttgcactccaagtgtttgataaaatgtt 18237369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 30360192 - 30360323
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||||||||||| |||||| | ||||| ||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  30360192 gcaagatatgatacaatgttacatgcaaatgagtaatattacttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 30360291  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  30360292 taatttgcactccaagtgtttgataaaatgtt 30360323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 41217284 - 41217415
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||| ||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  41217284 gcaagatatgatacaatattacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 41217383  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  41217384 taatttgcactccaagtgtttgataaaatgtt 41217415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 27318368 - 27318254
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |||||||||  |||||||     
T  27318368 gcaagaaatgatacaatgtttacatgtaaatgacttatattgtttaattgtttagatgtttgcatgtttatgttgtagttatgagttttagagtttatgc 27318269  T
Q  187 ataatttgccctcca 201  Q
    ||||||||| |||||    
T  27318268 ataatttgcactcca 27318254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 31267070 - 31267169
Alignment:
Q  95 aatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataattt 193  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||| || ||||||||| ||||||||||||||||    
T  31267070 aatgatacaatgttacatgtaaatgacttatattgcttaattgtttagatgtttgcttgtttatgatgtatttatgagttttagggtttatgtataattt 31267169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 40592408 - 40592539
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||| ||||||| |||||| | ||||||||||||||||||||| |||||||||||||| ||||||| | | ||||| ||||||||||    
T  40592408 gcaagatatgatacaatattacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgctgtagttatcatttttagggtttatgta 40592507  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||| |||||||||| |||||| |||||||    
T  40592508 taatttaccctccaagtgtttgataaaatgtt 40592539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 47268585 - 47268716
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||| ||||||| |||||| | ||||||||||||||| ||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  47268585 gcaagatatgatacaatattacatgcaaatgagtaatattgcttaattatctagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 47268684  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  47268685 taatttgcactccaagtgtttgataaaatgtt 47268716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 2355977 - 2356096
Alignment:
Q  102 caatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctcc 200  Q
    ||||||| |||| ||||||||||||||  |||||||||||||| |||||||||||||||||||||| | | ||||| |||||||||||||||||| ||||    
T  2355977 caatgtttcatgcaaatgacttatattatttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgtataatttgcactcc 2356076  T
Q  201 aagt-tttgattaaatgttt 219  Q
    |||| |||||| ||||||||    
T  2356077 aagtatttgatgaaatgttt 2356096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 20379218 - 20379103
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  |||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  20379218 gcaagatatgacccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 20379119  T
Q  188 taatttgccctccaag 203  Q
    |||||||| |||||||    
T  20379118 taatttgcactccaag 20379103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 21615294 - 21615176
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||| |  || ||| |||||||||| ||||||||||| ||||||||| ||||||||    
T  21615294 gcaagaattgataaaatgttacatgtaaatgatttatattgcttaattgtgtttggatgtttgcatgttaatgttgtagttatgagttttagggtttatg 21615195  T
Q  186 tataatttgccctccaagt 204  Q
    |||||||||| ||||||||    
T  21615194 tataatttgcactccaagt 21615176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 26603737 - 26603606
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||||||||||||| || |||| | | ||||||||||||||||| ||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  26603737 gcaagatatgatacaatgttacctgcaaataagtaatattgcttaattattttgatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 26603638  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  26603637 taatttgcactccaagtgtttgataaaatgtt 26603606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 48221274 - 48221143
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  |||||||||||| ||| || | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||||||    
T  48221274 gcaagatatgacccaatgttacatgcaaacgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttaaggtttatgta 48221175  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||  |||||||| |||||| |||||||    
T  48221174 taatttgtactccaagtgtttgataaaatgtt 48221143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 7414540 - 7414435
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    ||||||||| ||||||||||| | |||||||| ||||||||||||||| ||||||| |||||||||||| ||||||||| |||||||||  |||||||||    
T  7414540 gcaagaaattatacaatgttataagtaaatgatttatattgcttaattgtttagatatttgcatgtttacgttgtagttatgagttttagagtttatgta 7414441  T
Q  188 taattt 193  Q
    ||||||    
T  7414440 taattt 7414435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 12310072 - 12309997
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| ||||||||    
T  12310072 tttgcatgtttatgttgtagttttgagttttagggtttatgtataatttgcactccaagtgtttgatgaaatgttt 12309997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 149763 - 149888
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||       ||||| |||| |||| ||||||||||    
T  149763 gcaagaaatgatataatgttacatgtaaatgacttatattgcttaattgtttagatgtttgcatgtt-------tagttatgagctttagggtttatgta 149855  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    || | ||| |||||||| |||||| ||||||||    
T  149856 tattatgcactccaagtgtttgatgaaatgttt 149888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 41935885 - 41935796
Alignment:
Q  94 aaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttat 184  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||   | |||||||||||||||||| |||||||    
T  41935885 aaatgatacaatgtttacatgtaaatgacttatattgcttaattatttagatgtttgcatgt---tattgtagttttgagttttagggtttat 41935796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 7066459 - 7066534
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| ||||||||    
T  7066459 tttgcaagtttatgttgtagttttgagttttagggtttatgtataatttgcactccaagtgtttgatgaaatgttt 7066534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 21615429 - 21615340
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| |||||||||| ||||||||||||||| | |||||||| | ||||||| |||||||||||| |||||||||||||||||||    
T  21615429 gcaagaaatcatacaatgtttacatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttaagttgtagttttgagtttta 21615340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 18146494 - 18146565
Alignment:
Q  90 caagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgtt 160  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||  ||| ||||||||||||||||    
T  18146494 caagaaatgatacaatgttacatgtaaatgaattatattgcttaattgttatgatgtttgcatgtttatgtt 18146565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 8726887 - 8726798
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| |||||||||| ||||| ||||||||| | |||||||| | ||||||| ||| ||||||||||||||||||||||||||||    
T  8726887 gcaagaaatcatacaatgtttacatgaaaatgacttgtgttgcttaaatgtttagatgttttcatgtttatgttgtagttttgagtttta 8726798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 13798867 - 13798956
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||| |||||| ||||||||||||||| | |||||||| | ||||||| ||||||| ||||||||||||||||||||||||    
T  13798867 gcaagaaatcatataatgtttacatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatttttatgttgtagttttgagtttta 13798956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 40592272 - 40592361
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||  ||||||||||  |||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  40592272 gcaagaaaccatacaatgtttgcatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 40592361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 47268449 - 47268538
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | |||||||| | ||||||| |||||||||||||||||| |||||||||||||    
T  47268449 gcaagaaatcatacaatgtttgcatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgttgttttgagtttta 47268538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 7061968 - 7062027
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt 204  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  7061968 tttgcaagtttatgttgtagttttgagttttagtgtttatgtataatttgcactccaagt 7062027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 39477692 - 39477625
Alignment:
Q  110 catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    |||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  39477692 catgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 39477625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 1321779 - 1321690
Alignment:
Q  131 ttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||| ||||||||| ||||||||||||| || |||||||| ||||||||||||||||||| ||||| |||||||| |||||| ||||||||    
T  1321779 ttaaatatttagatgtttgcatgtttatattttagttttg-gttttaaggtttatgtatattttgcactccaagtgtttgatgaaatgttt 1321690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 18237099 - 18237189
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaat--gacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||| || |||||||||  ||||| | |||||||| | ||||||| ||||||||||||| ||||||||||||||||||    
T  18237099 gcaagaaatcatacaattttgcatgtaaatatgacttgtgttgcttaaatgtttagatgtttgcatgtttatattgtagttttgagtttta 18237189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 11824021 - 11824067
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaat 135  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  11824021 gcaagaaatgatacaatgtgacatgtaaatgatttatattgcttaat 11824067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 2355820 - 2355867
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  2355820 gcaagaaatgatagaatgttacatgcaaatgacttatagtgcttaatt 2355867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 26926245 - 26926300
Alignment:
Q  149 catgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt 204  Q
    ||||||||||||| |||||| ||||||| | |||||||||||||||| ||||||||    
T  26926245 catgtttatgttgaagtttttagttttaggatttatgtataatttgcactccaagt 26926300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 26603881 - 26603834
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||| ||||||| |||||||||    
T  26603881 gcaagaaatgatagaatgttacatgcaaataacttatagtgcttaatt 26603834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 30360076 - 30360123
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||| | ||||||||||| |||||||||||| |||||||||    
T  30360076 gcaagaaatgagagaatgttacatgcaaatgacttatagtgcttaatt 30360123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 48221410 - 48221363
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||| ||| |||||||||||| |||||||||    
T  48221410 gcaagaaatgatagaatgttatatgcaaatgacttatagtgcttaatt 48221363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 20379351 - 20379306
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaa 134  Q
    |||| |||||||| ||||||||||| |||||||||||| |||||||    
T  20379351 gcaaaaaatgatagaatgttacatgcaaatgacttatagtgcttaa 20379306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 20759670 - 20759539
Alignment:
Q  90 caagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtat 188  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |||||||||||    
T  20759670 caagaaatgatacaaagttacatgtaaatgacttatattgcttaattgtttagatgtttgcatgtttatgttgtagttatgagttttagggtttatgtat 20759571  T
Q  189 aatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||| |||||||| |||||| ||||||||    
T  20759570 aatttgcactccaagtgtttgatgaaatgttt 20759539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 20766061 - 20765930
Alignment:
Q  90 caagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtat 188  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |||||||||||    
T  20766061 caagaaatgatacaaagttacatgtaaatgacttatattgcttaattgtttagatgtttgcatgtttatgttgtagttatgagttttagggtttatgtat 20765962  T
Q  189 aatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||| |||||||| |||||| ||||||||    
T  20765961 aatttgcactccaagtgtttgatgaaatgttt 20765930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 3392977 - 3393109
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||| ||||||||||    
T  3392977 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattgtttagatgtttgcatgttaatgttgtagttatgagttttagggtttatgta 3393076  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    ||| |||| || ||||| |||||| ||||||||    
T  3393077 taagttgcacttcaagtgtttgatgaaatgttt 3393109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 32938438 - 32938304
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |  || ||| |||||||||| ||||||| ||| ||||||||| ||||||||    
T  32938438 gcaagaaatgatacaatgttacatgtaaatgacttatcttgcttaattgtgtttggatgtttgcatgttaatgttgtcgttatgagttttagggtttatg 32938339  T
Q  186 tataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||||| |||||||| |||||| ||||||||    
T  32938338 tataatttgcactccaagtgtttgatgaaatgttt 32938304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 42420715 - 42420820
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||| ||||||| ||||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  42420715 gcaaaaaatgattcaatgttacatgtaaatgactgatattgctgaattgtttagatgtttgcatgtttatgttgtagttatgagttttagggtttatgta 42420814  T
Q  188 taattt 193  Q
    ||||||    
T  42420815 taattt 42420820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 21711231 - 21711349
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||||| |  || ||| |||||||||| ||||||||||| ||||||||| ||||||||    
T  21711231 gcaagatatgatacaatgttacatgcaaatgacttatcttgcttaattgtgtttggatgtttgcatgttaatgttgtagttatgagttttagggtttatg 21711330  T
Q  186 tataatttgccctccaagt 204  Q
    |||||||||| ||||||||    
T  21711331 tataatttgcactccaagt 21711349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 24606423 - 24606557
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |  || ||| ||||||| || ||||||||||| ||||||||||||||||||    
T  24606423 gcaagaaatgatacaatgttacatgtaaatgacttatcttgcttaattgtgtttggatgtttgcatattaatgttgtagttatgagttttaaggtttatg 24606522  T
Q  186 tataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||  |||| | |||||||| |||||| ||||||||    
T  24606523 taagatttactctccaagtgtttgatgaaatgttt 24606557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 33164078 - 33163947
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  |||||||||||| |||||| | ||||||||||||||||||||| |||||||||| ||||||||||| | | ||||| ||||||||||    
T  33164078 gcaagatatgacccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgttcatgttgtagttatcatttttagggtttatgta 33163979  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  33163978 taatttgcactccaagtgtttgataaaatgtt 33163947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 31931254 - 31931371
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||| ||||||||||| |||||||||  |||||||||  |||||| |    
T  31931254 gcaagaaatgatacaatgtttacatgtaattgacttatattgcctaattgtttagatgtttgcatgtttgtgttgtagtcatgagttttagagtttatat 31931353  T
Q  187 ataatttgccctccaagt 204  Q
    ||||||||| ||||||||    
T  31931354 ataatttgcactccaagt 31931371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 18412281 - 18412384
Alignment:
Q  102 caatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctcc 200  Q
    ||||||||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||| ||||||||| ||||||| |||| ||| | ||||    
T  18412281 caatgttacatgtaaatgacttatattgcttaattgtttacatgtttgcatttttatgttgtagttatgagttttagggtttatttatatttttcactcc 18412380  T
Q  201 aagt 204  Q
    ||||    
T  18412381 aagt 18412384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 31323848 - 31323961
Alignment:
Q  91 aagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtat 188  Q
    ||||||| |||||||||| ||||| ||||||||  | |||||||| | ||||||| |||||||||||||||||||||| ||||||||| |||||||||||    
T  31323848 aagaaatcatacaatgtttacatgaaaatgactagtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttatgagttttagggtttatgtat 31323947  T
Q  189 aatttgccctccaa 202  Q
    ||||||| ||||||    
T  31323948 aatttgcactccaa 31323961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 1225850 - 1225965
Alignment:
Q  106 gttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt 204  Q
    |||||||| |||||| | ||||||||||||||||||||| ||||||||||||| |||||||| | | ||||| |||||||| ||||||||| ||||||||    
T  1225850 gttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatattgtagttatcatttttagggtttatgaataatttgcactccaagt 1225949  T
Q  205 -tttgattaaatgttt 219  Q
     |||||| ||||||||    
T  1225950 gtttgatgaaatgttt 1225965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 23125058 - 23124934
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||||||||||||||||||||        ||||||| ||| ||| ||||| |||||||| ||||||||| ||||||||||    
T  23125058 gcaagaaatgatacaatgttacatgtaaatgacttatattg--------tttagatgtttccatatttatattgtagttatgagttttagggtttatgta 23124967  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    || ||||| |||||||| |||||| ||||||||    
T  23124966 tattttgcactccaagtgtttgatgaaatgttt 23124934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 44100019 - 44100150
Alignment:
Q  91 aagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtat 188  Q
    ||||| |||||||||||| ||||||||||||||||| |||||||| | ||||||| |||||||| |||| |||||| ||| ||||||  |||||||||||    
T  44100019 aagaattgatacaatgtttacatgtaaatgacttatgttgcttaaatgtttagatgtttgcatgcttattttgtagattttagtttttgggtttatgtat 44100118  T
Q  189 aatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||  |||||||| |||||| ||||||||    
T  44100119 aatttgtactccaagtgtttgatgaaatgttt 44100150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 46817060 - 46816929
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  |||||||||||| |||||| | |||||||||| |||||||||| |||||||||||||||||||||| | | | ||| ||||||||||    
T  46817060 gcaagatatgacccaatgttacatgcaaatgagtaatattgcttacttatttagatgtttgcatgtttatgttgtagttatcattattagggtttatgta 46816961  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||| | |||||| |||||||    
T  46816960 taatttgcactccaaatgtttgataaaatgtt 46816929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 17210938 - 17211071
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaat--tatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    ||||||||||||||||||||||| |||| || ||||| |||||||||  | ||||||| |||| ||||| || |||||||| |||||||| |||||||||    
T  17210938 gcaagaaatgatacaatgttacaagtaattggcttatgttgcttaattgtgtttagatgtttgtatgttaattttgtagttatgagtttt-aggtttatg 17211036  T
Q  186 tataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||||| || ||||| |||||| ||||||||    
T  17211037 tataatttgcacttcaagtgtttgatgaaatgttt 17211071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 49063651 - 49063769
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    |||||| |||||||||||||||||  ||||||||||| |||||||||| |  || ||| |||||||||| || |||||||| ||||||||| ||||||||    
T  49063651 gcaagatatgatacaatgttacatacaaatgacttatcttgcttaattgtgtttggatgtttgcatgttaatattgtagttatgagttttagggtttatg 49063750  T
Q  186 tataatttgccctccaagt 204  Q
    |||||||| | ||||||||    
T  49063751 tataattttcactccaagt 49063769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 27759186 - 27759275
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  27759186 gcaagaaatcatacaatgtttgcatgtaaatgacttgtgttgcttaaatgtttagatatttgcatgtttatgttgtagttttgagtttta 27759275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 49063516 - 49063605
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  49063516 gcaagaaattatacaatgttttcatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 49063605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 14331374 - 14331285
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | |||||||| | ||||||| |||||||||| |||||||||||||||||||||    
T  14331374 gcaagaaatcatacaatgttttcatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgttaatgttgtagttttgagtttta 14331285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 20779379 - 20779287
Alignment:
Q  115 aaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt 204  Q
    ||||||||||| |||||||||| |  || ||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  20779379 aaatgacttatcttgcttaattgtgtttggatgtttgcatgttaatgttgtagttatgagttttagggtttatgtataatttgcactccaagt 20779287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 21711091 - 21711180
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | || ||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  21711091 gcaagaaattatacaatgttttcatgtaaatgacttgtgttacttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 21711180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 31825282 - 31825193
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | |||||||| | ||||||| ||||||||||||||||||| ||||||||||||    
T  31825282 gcaagaaatcatacaatgtttgcatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtacttttgagtttta 31825193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 31825528 - 31825439
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | |||||||| | ||||||| ||||||||||||||||||| ||||||||||||    
T  31825528 gcaagaaatcatacaatgtttgcatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtacttttgagtttta 31825439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 13850431 - 13850529
Alignment:
Q  99 atacaatgtt-acatgtaaatgacttatattgcttaattatttagatttt-gcatgtttatgttgtagttttgagttttaaggtttatgtataatttgc 195  Q
    |||||||||| ||||| |||||| || | |||||||| | ||||||| || ||||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  13850431 atacaatgtttacatgaaaatgatttgtgttgcttaaatgtttagatgttcgcatgcttatgttgtagttatgagttttagggtttatgtataatttgc 13850529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 24606307 - 24606377
Alignment:
Q  107 ttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    |||||||||||| |||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  24606307 ttacatgtaaataacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 24606377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 17210802 - 17210891
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||| ||  |||| ||| ||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  17210802 gcaagaaatcatacaatattttcatgaaaaagacttgtgttgcttaaatatttagatgtttgcatgtttatgttgtagttttgagtttta 17210891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 3510907 - 3510831
Alignment:
Q  144 ttttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||| |||||||||||| ||||||| ||||||| |||||||||||| ||||| |||||||| |||||| ||||||||    
T  3510907 ttttacatgtttatgttttagtttttagttttagggtttatgtatattttgcactccaagtgtttgatgaaatgttt 3510831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 13865965 - 13866061
Alignment:
Q  107 ttacatgtaaatgacttatattgcttaattatttagatttt-gcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaa 202  Q
    ||||||| |||||| || | |||||||| | ||||||| || ||||| ||||||||||||| ||||||||| ||||| |||||||||||| ||||||    
T  13865965 ttacatgaaaatgatttgtgttgcttaaatgtttagatgttcgcatgcttatgttgtagttatgagttttagggtttctgtataatttgcactccaa 13866061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 14331238 - 14331112
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaat--tatttagat---------tttgcatgtttatgttgtagttttgagttttaa 177  Q
    |||||| |||||||||||||||||| |||||||| || |||||||||  | ||| |||         |||||||||| ||||||||||| ||| |||||     
T  14331238 gcaagatatgatacaatgttacatgaaaatgactcatcttgcttaattgtgtttggatgtttggatgtttgcatgttaatgttgtagttatgaattttag 14331139  T
Q  178 ggtttatgtataatttgccctccaagt 204  Q
    |||||||||||||||||| ||||||||    
T  14331138 ggtttatgtataatttgcactccaagt 14331112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 20779466 - 20779381
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagt 172  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||| |  || ||| |||||||||| ||||||||||| |||||    
T  20779466 gcaagaaatgatacaa-gttacatgtaaatgacttatcttgcttaattgtgtttggatgtttgcatgttaatgttgtagttatgagt 20779381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 27759321 - 27759375
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttaga 143  Q
    |||||| |||||||||||||||||| |||||| | ||||||||||||||||||||    
T  27759321 gcaagatatgatacaatgttacatgcaaatgagtaatattgcttaattatttaga 27759375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 20779607 - 20779518
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    |||| |||| |||||||||| |||| |||||||||| | | |||||| | ||||||| |||||||||||||||||| |||||||||||||    
T  20779607 gcaataaatcatacaatgtttacatataaatgacttgtgtggcttaactgtttagatgtttgcatgtttatgttgttgttttgagtttta 20779518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 23125201 - 23125130
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgtt 160  Q
    |||||||||||||||||||| ||| | |||||| |||||||||||| | ||||||| ||||||||||||||||    
T  23125201 gcaagaaatgatacaatgttgcatctcaatgacatatattgcttaa-tgtttagatgtttgcatgtttatgtt 23125130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 3392851 - 3392930
Alignment:
Q  99 atacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    |||||||||| ||||| ||||||||| | |||||||  | ||||||| ||||||||||||| ||||||||||||||||||    
T  3392851 atacaatgtttacatgaaaatgacttgtgttgcttacatgtttagatgtttgcatgtttatattgtagttttgagtttta 3392930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 31825101 - 31825032
Alignment:
Q  150 atgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgtt 218  Q
    ||||||||||||||||| | | ||||| |||||||||||||||||| |||| ||| |||||| |||||||    
T  31825101 atgtttatgttgtagttatcatttttagggtttatgtataatttgcactccgagtgtttgataaaatgtt 31825032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 33164210 - 33164165
Alignment:
Q  91 aagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||    
T  33164210 aagaaatgatagaatgttacatgcaaatgacttatagtgcttaatt 33164165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 17291684 - 17291760
Alignment:
Q  144 ttttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||| ||||| || ||||| ||| ||||| |||||||||||||||||  |||||||| |||||| ||||||||    
T  17291684 ttttgcatttttatattatagttatgatttttagggtttatgtataatttgaactccaagtgtttgatgaaatgttt 17291760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 25144226 - 25144301
Alignment:
Q  144 ttttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||| |||||||||||  |||| ||| ||||| |||||||||||||||||| |||||||| |||||| ||||||||    
T  25144226 ttttgtatgtttatgttacagttatgattttta-ggtttatgtataatttgcactccaagtgtttgatgaaatgttt 25144301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 11866620 - 11866561
Alignment:
Q  143 attttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaa 202  Q
    ||||||||  |||||||| ||||||| ||||||| |||||||||||||||| | ||||||    
T  11866620 attttgcacatttatgttatagtttttagttttagggtttatgtataatttacactccaa 11866561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 12587381 - 12587452
Alignment:
Q  149 catgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||||||| ||||||| ||||||   ||||||||||| ||||| |||||||| |||||| ||||||||    
T  12587381 catgtttatgttttagtttttagttttggagtttatgtatattttgcactccaagtgtttgatgaaatgttt 12587452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 24074863 - 24074911
Alignment:
Q  172 ttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||| |||||||||||||||||| |||||||| |||||| ||||||||    
T  24074863 ttttagggtttatgtataatttgcactccaagtgtttgatgaaatgttt 24074911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 18878185 - 18878301
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||| ||||||||||||||||||||    
T  18878185 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattgtttatatgtttgtatgtttatgttgtagttatgagttttaaggtttatgta 18878284  T
Q  188 taatttgccctccaagt 204  Q
    |||||||| ||||||||    
T  18878285 taatttgcactccaagt 18878301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 21557293 - 21557160
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  21557293 gcaagaaatgatacaatgtttacatgtaaatgacttatattgcttatttgtttagatgtttgcatgtttatgttgtagttttgagttttagagtttatgt 21557194  T
Q  187 ataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||||| |||||||| |||||| ||||||||    
T  21557193 ataatttgcactccaagtgtttgatgaaatgttt 21557160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 20147795 - 20147911
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| || ||||||||| ||||||||||    
T  20147795 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattgtttagatgtttgcatgttaatgttgtaattatgagttttagggtttatgta 20147894  T
Q  188 taatttgccctccaagt 204  Q
    |||||||| ||||||||    
T  20147895 taatttgcactccaagt 20147911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 27650968 - 27650854
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||  ||||||||     
T  27650968 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattgtttagatgtttgcatgtttatgttgtagttatgagttttagagtttatgtt 27650869  T
Q  188 taatttgccctccaa 202  Q
    || ||||| ||||||    
T  27650868 tattttgcactccaa 27650854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 17796637 - 17796505
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  17796637 gcaagatatgatacaatgttacatgcaaatgacttatattgcttaattgtttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 17796538  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||| | |||||||| |||||| ||||||||    
T  17796537 taattttcactccaagtgtttgatgaaatgttt 17796505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 16706642 - 16706776
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |  ||| || |||||||||| ||||||||||| ||| ||||| ||||||||    
T  16706642 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattgtgtttaaatgtttgcatgttaatgttgtagttatgaattttagggtttatg 16706741  T
Q  186 tataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||||| ||| |||| |||||| ||||||||    
T  16706742 tataatttgcactctaagtgtttgatgaaatgttt 16706776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 36194736 - 36194608
Alignment:
Q  93 gaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataat 191  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||| | | |||||| ||||||||||| ||||||||||| ||||||||||||    
T  36194736 gaaatgatacaatgttatatgtaaatgacttatattgcttaattgtttagatgtctacatgttaatgttgtagttatgagttttaagatttatgtataat 36194637  T
Q  192 ttgccctccaagt-tttgattaaatgttt 219  Q
    |||| ||  |||| |||||| ||||||||    
T  36194636 ttgcactttaagtgtttgatgaaatgttt 36194608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 22492948 - 22493079
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  |||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  22492948 gcaagatatgacccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 22493047  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  22493048 taatttgcactccaagtgtttgataaaatgtt 22493079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 42119689 - 42119820
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  |||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  42119689 gcaagatatgacccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 42119788  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  42119789 taatttgcactccaagtgtttgataaaatgtt 42119820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 6901651 - 6901775
Alignment:
Q  99 atacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgc 195  Q
    ||||||||||||||||||||||||||| |||||||||| |  || ||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  6901651 atacaatgttacatgtaaatgacttatcttgcttaattgtgtttcgatgtttgcatgttaatgttgtagttatgagttttagggtttatgtataatttgc 6901750  T
Q  196 cctccaagt-tttgattaaatgttt 219  Q
     |||||||| |||||| ||||||||    
T  6901751 actccaagtgtttgatgaaatgttt 6901775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 16706499 - 16706588
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat-ttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||    
T  16706499 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattgtgatagatgtttgcatgtttatgttgtagttttgagtttta 16706588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 26618012 - 26617880
Alignment:
Q  90 caagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaagg-tttatgta 187  Q
    ||||||||||||||  |||||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||| ||||||||| || ||||||||    
T  26618012 caagaaatgatacagcgttacatgtaaatgacttatattgtttaattgttaagatgtttgcatgtttatgttgtagttatgagttttagggttttatgta 26617913  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||| | | |||||||| |||||| ||||||||    
T  26617912 taatgttcactccaagtgtttgatgaaatgttt 26617880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 32734325 - 32734441
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||||||||||| |||||| | | ||||||||||||  ||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  32734325 gcaagatatgatacaatgttacatgcaaatgagtaacattgcttaattacgtagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 32734424  T
Q  188 taatttgccctccaagt 204  Q
    |||||||| ||||||||    
T  32734425 taatttgcactccaagt 32734441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 12968831 - 12968700
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  ||||| |||||| |||||| | |||||||||||||| |||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  12968831 gcaagatatgacccaatgctacatgcaaatgagtaatattgcttaattacttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 12968732  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  12968731 taatttgcactccaagtgtttgataaaatgtt 12968700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 29906258 - 29906389
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||||||||||| |||| |||||| | |||||| ||||||||| |||| |||||||||||||||||||||| | | ||||  ||||||||||    
T  29906258 gcaagatatgatacaatgttgcatgcaaatgagtaatattggttaattattcagatgtttgcatgtttatgttgtagttatcatttttcgggtttatgta 29906357  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  29906358 taatttgcactccaagtgtttgataaaatgtt 29906389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 28277420 - 28277297
Alignment:
Q  89 gcaagaaatgatacaatgttacat----gtaaatgacttatattgcttaattatttagatttt-gcatgtttatgttgtagttttgagttttaaggttta 183  Q
    ||||||||||||||||||||||||    |||||  || |||| |||||||||||||||||||| ||||||||||||||||  | ||||||||| ||||||    
T  28277420 gcaagaaatgatacaatgttacatatatgtaaacaacatatactgcttaattatttagatttttgcatgtttatgttgtaactatgagttttagggttta 28277321  T
Q  184 tgtataatttgccctccaagtttt 207  Q
    |||||||||||| ||||| |||||    
T  28277320 tgtataatttgcactccacgtttt 28277297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 29110842 - 29110952
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagattttgcatgtttatgttgtagttttgagttttaaggtttatgtat 188  Q
    |||||||||||||||||||||||||||| |||||||| |||||| ||| | |     ||||||||| ||||||||||| |||||| || |||||||||||    
T  29110842 gcaagaaatgatacaatgttacatgtaattgacttatcttgcttgattgtgt-----ttgcatgttaatgttgtagttatgagttctagggtttatgtat 29110936  T
Q  189 aatttgccctccaagt 204  Q
    ||||||| ||||||||    
T  29110937 aatttgcactccaagt 29110952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 40500970 - 40501078
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    ||||||||||||||| |||| |||||| |||||||||| ||||||||   | ||||| ||||||||||||||||||| |||| ||||||| |||||||||    
T  40500970 gcaagaaatgatacattgtttacatgtgaatgacttatgttgcttaaacgtatagatgtttgcatgtttatgttgtattttttagttttagggtttatgt 40501069  T
Q  187 ataatttgc 195  Q
    |||||||||    
T  40501070 ataatttgc 40501078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 29110707 - 29110796
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagatttt-gcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| |||||||||| ||||||||||||||| | |||||||| | ||||||| || |||||||||||||||||||||||||||||    
T  29110707 gcaagaaatcatacaatgtttacatgtaaatgacttgtgttgcttaaatgtttagatgttcgcatgtttatgttgtagttttgagtttta 29110796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 42241631 - 42241515
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||||| |  || ||| |||||||||| ||||||||||| ||||||||  | ||||||    
T  42241631 gcaagatatgatacaatgttacatgcaaatgacttatcttgcttaattgtgtttggatgtttgcatgttaatgttgtagttatgagtttttggatttatg 42241532  T
Q  186 tataatttgccctccaa 202  Q
    |||||||| | ||||||    
T  42241531 tataattttcactccaa 42241515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 42241766 - 42241677
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||| ||||  |||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  42241766 gcaagaaatcatacattgttttcatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 42241677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 5306987 - 5306904
Alignment:
Q  111 atgtaaatgacttatattgcttaattatttagatttt-gcatgtttatgttgtagttttgagttttaaggtttatgtataattt 193  Q
    ||||||||||||||| |||||||| | ||||| |  | ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  5306987 atgtaaatgacttatgttgcttaaatgtttaggtgatagcatgtttatgttgtagtttttagttttagggtttatgtataattt 5306904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 27651306 - 27651251
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat 144  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  27651306 gcaagaaatggtacaatgttacatgtaaatgacgtatattgcttaattgtttagat 27651251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 28747425 - 28747350
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaag-ttttgattaaatgttt 219  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||||||||| || |||| ||||||| ||||||||    
T  28747425 tttgcatgtttatgttatagttatgagttttagggtttatgtataatttgcacttcaagtttttgatgaaatgttt 28747350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 29906122 - 29906211
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||| ||||||  |||| ||||||||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  29906122 gcaagaaatcatataatgtttgcatgaaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 29906211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 12968967 - 12968920
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  12968967 gcaagaaatgatagaatgttacatgcaaatgacttatagtgcttaatt 12968920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 17796784 - 17796737
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||||||||||||| || |||||||||    
T  17796784 gcaagaaatgataaaatgttacatgtaaatgacttgtagtgcttaatt 17796737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 20988255 - 20988330
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||| ||||||||  |||||||||||||||||| ||||||||||||||||| |  ||||| |||||| ||||||||    
T  20988255 tttgtatgtttatactgtagttttgagttttaatgtttatgtataatttgcaccgcaagtatttgataaaatgttt 20988330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 6899620 - 6899651
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||||||||||||||||||||||||||    
T  6899620 tttgcatgtttatgttgtagttttgagtttta 6899651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 16706386 - 16706453
Alignment:
Q  110 catgtaaatgacttatattgcttaattatttagatttt-gcatgtttatgttgtagttttgagtttta 176  Q
    |||| ||||||||| | ||| |||| | |||||||||| | |||||||||||||||||||||||||||    
T  16706386 catgaaaatgacttgtgttgtttaaatgtttagatttttggatgtttatgttgtagttttgagtttta 16706453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 22492816 - 22492863
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||| ||||| |||||||||    
T  22492816 gcaagaaatgatagaatgttacatgcaaatgagttatagtgcttaatt 22492863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 20147687 - 20147749
Alignment:
Q  115 aaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| | ||| |||| | ||||||| ||||||||||||||||||| ||||||||||||    
T  20147687 aaatgacttgtgttgtttaaatgtttagatgtttgcatgtttatgttgtaattttgagtttta 20147749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 42119576 - 42119621
Alignment:
Q  91 aagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||| ||||||||||| |||||||||||| || ||||||    
T  42119576 aagaaatgatagaatgttacatgcaaatgacttatagtgtttaatt 42119621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 18744492 - 18744362
Alignment:
Q  91 aagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtata 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||    
T  18744492 aagaaatgatacaatgttacatgtaaatgacttatattgcttaattgtttagatgtttgcatgtttatgttgtagttatgagttttatggtttttgtata 18744393  T
Q  190 atttgccctccaagt-tttgattaaatgttt 219  Q
    |||| | |||||||| |||||| ||||||||    
T  18744392 attttcactccaagtgtttgatgaaatgttt 18744362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 3098038 - 3097906
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| ||| ||||| ||||||||| ||||||||||    
T  3098038 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattgcttagatgtttgcatgtttacgttatagttatgagttttagggtttatgta 3097939  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||| |||||||| |||||| ||||||||    
T  3097938 taatttgcactccaagtgtttgatgaaatgttt 3097906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 14483345 - 14483229
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||| | ||||||  ||||||||||    
T  14483345 gcaagaaatgatacaatgttacatgtaaatcacttatattgcttaattgtttagttgtttgcatgtttatgttgtagttatcagttttcgggtttatgta 14483246  T
Q  188 taatttgccctccaagt 204  Q
     ||||||| ||||||||    
T  14483245 caatttgcactccaagt 14483229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 800843 - 800974
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  800843 gcaagatatgatacaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 800942  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||| ||| |||||||| |||||| |||||||    
T  800943 taatgtgcactccaagtgtttgataaaatgtt 800974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 28051092 - 28051210
Alignment:
Q  103 aatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctcca 201  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| || | ||||||| |||||||||||||||||| |||||    
T  28051092 aatgttacatgtaaatgacttatattgcttaattgtgtagatgtttgcatgtttatgttgtaattatcagttttagggtttatgtataatttgcactcca 28051191  T
Q  202 agt-tttgattaaatgttt 219  Q
    | | |||||| ||||||||    
T  28051192 attatttgatgaaatgttt 28051210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 20243848 - 20243981
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||| |||||||| |||||| ||||||||||||||||| |||||||||| ||||||| |||||| || ||||||||||||||||||||||  ||||||||    
T  20243848 gcaaaaaatgatataatgtttacatgtaaatgacttatgttgcttaattgtttagatgtttgcaagtgtatgttgtagttttgagttttagagtttatgt 20243947  T
Q  187 ataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||| | |||||||| |||||| ||||||||    
T  20243948 ataattttcactccaagtgtttgatgaaatgttt 20243981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 22137832 - 22137965
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||| |||||||| |||||| ||||||||||||||||| |||||||||| ||||||| |||||| || ||||||||||||||||||||||  ||||||||    
T  22137832 gcaaaaaatgatataatgtttacatgtaaatgacttatgttgcttaattgtttagatgtttgcaagtgtatgttgtagttttgagttttagagtttatgt 22137931  T
Q  187 ataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||| | |||||||| |||||| ||||||||    
T  22137932 ataattttcactccaagtgtttgatgaaatgttt 22137965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 5570812 - 5570920
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||| ||||||| |||| |||||||| |||||||| ||||||||| |||||||||    
T  5570812 gcaataaatgatacaatgtttacgtgtaaatgacttatattgcttaattgtttagatgtttgaatgtttatcttgtagttatgagttttagggtttatgt 5570911  T
Q  187 ataatttgc 195  Q
    |||||||||    
T  5570912 ataatttgc 5570920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 24559566 - 24559680
Alignment:
Q  107 ttacatgtaaatgacttatattgcttaattatttagatttt-gcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt- 204  Q
    |||||||||||||||| || |||||||||||||||||| |  |||||||||||| |||||||||||||||| |||||||||||||||| | |||||| |     
T  24559566 ttacatgtaaatgactaatgttgcttaattatttagatgtaagcatgtttatgtcgtagttttgagttttagggtttatgtataattttcactccaattg 24559665  T
Q  205 tttgattaaatgttt 219  Q
    |||||| ||||||||    
T  24559666 tttgatgaaatgttt 24559680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 35060479 - 35060369
Alignment:
Q  110 catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-ttt 207  Q
    |||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||||| |||| |||||||| |||    
T  35060479 catgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgtataagttgcactccaagtgttt 35060380  T
Q  208 gattaaatgtt 218  Q
    ||| |||||||    
T  35060379 gataaaatgtt 35060369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 28050935 - 28050982
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28050935 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 28050982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 800706 - 800795
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | ||| |||| | ||||||| ||||||||||||||| ||||||||||||||||    
T  800706 gcaagaaatcatacaatgtttgcatgtaaatgacttgtgttgtttaaatgtttagatgtttgcatgtttatgtagtagttttgagtttta 800795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 14095326 - 14095454
Alignment:
Q  94 aaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataat 191  Q
    |||||||| |||||| | || ||||||| ||||||||||||| | ||||||| |||| ||||||||||||| ||| ||||||| |  |||||||||||||    
T  14095326 aaatgataaaatgtttatatataaatgatttatattgcttaagtgtttagatatttgtatgtttatgttgttgttgtgagtttaagcgtttatgtataat 14095425  T
Q  192 ttgccctccaagt-tttgattaaatgttt 219  Q
    |||| ||| || | |||||| ||||||||    
T  14095426 ttgcactcaaattgtttgatgaaatgttt 14095454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 5973498 - 5973423
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||||||||  || ||||| |||||| ||||||||    
T  5973498 tttgcatgtttatgttgtagttttaagttttagggtttgtgtataatttgtacttcaagtgtttgatgaaatgttt 5973423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 19242478 - 19242584
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    ||||||||||||||||  || |||| |||||||||||| |||||||| | |||| || ||||||||||||| || ||||||| |||| || |||||||||    
T  19242478 gcaagaaatgatacaagatttacatataaatgacttatgttgcttaaatgtttaaatgtttgcatgtttatattatagtttt-agttatagggtttatgt 19242576  T
Q  187 ataatttg 194  Q
    | ||||||    
T  19242577 aaaatttg 19242584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 35060625 - 35060578
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  35060625 gcaagaaatgataaaatgttacatgcaaatgacttatagtgcttaatt 35060578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 14483447 - 14483391
Alignment:
Q  105 tgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgtt 160  Q
    |||||||||||||||||||||||||||||||| ||  ||| ||| ||||||||||||    
T  14483447 tgttacatgtaaatgacttatattgcttaattgttatgatgtttacatgtttatgtt 14483391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 21865365 - 21865317
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataattt 193  Q
    |||||||||||||||| || || ||||||||||||||||| ||||||||    
T  21865365 tttgcatgtttatgttataattatgagttttaaggtttatatataattt 21865317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 26856447 - 26856495
Alignment:
Q  172 ttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||| |||||||||||||||||| |||||||| |||||| ||||||||    
T  26856447 ttttagggtttatgtataatttgcactccaagtgtttgatgaaatgttt 26856495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 12742388 - 12742504
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||| ||||||||||    
T  12742388 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattgtttagatgtttgcatgttaatgttgtagttatgagttttagggtttatgta 12742487  T
Q  188 taatttgccctccaagt 204  Q
    |||||||| || |||||    
T  12742488 taatttgcacttcaagt 12742504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 12805206 - 12805322
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||| ||||||||||    
T  12805206 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattgtttagatgtttgcatgttaatgttgtagttatgagttttagggtttatgta 12805305  T
Q  188 taatttgccctccaagt 204  Q
    |||||||| || |||||    
T  12805306 taatttgcacttcaagt 12805322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 19747733 - 19747849
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttaga-ttttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||| | ||||||||    
T  19747733 gcaagaaatgatacaatgttacatataaatgacttatattgcttaattgtttagatttttgcatgtttatgttgtagttatgagttttaggatttatgta 19747832  T
Q  188 taatttgccctccaagt 204  Q
    |||||||  ||||||||    
T  19747833 taatttgtactccaagt 19747849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 36312487 - 36312349
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||  |||||| |||||||||||||||||||||  ||||||||| ||||||||||    
T  36312487 gcaagaaatgatacaatgttacatgtaaatgacttatattgtttaattgcttagatgtttgcatgtttatgttgtagtaatgagttttagggtttatgta 36312388  T
Q  188 taatttgccctccaagt-tttgattaaatgtttcaatta 225  Q
    ||||||   |||||||| |||||| |||||||| |||||    
T  36312387 taatttcgactccaagtgtttgatgaaatgtttgaatta 36312349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 28717749 - 28717866
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| ||||| |||||||||    
T  28717749 gcaagaaatgatacaatgtttacatgtcaatgacttatattgcttaattgtttagatgtttgcatgtttatgttgtagttatgacttttagggtttatgt 28717848  T
Q  187 ataatttgccctccaagt 204  Q
    ||| ||||| ||||||||    
T  28717849 atattttgcactccaagt 28717866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 10975489 - 10975621
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagatttt-gcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||   |||||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||| |||| ||||  |||||||||    
T  10975489 gcaagaaatgatacatgtttacatgtaaatgacttatattgcttaattgtctagatgttagcatgtttatgttgtagttatgagatttagagtttatgta 10975588  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||| |||||||| |||||| ||||||||    
T  10975589 taatttgcactccaagtgtttgatgaaatgttt 10975621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 15798623 - 15798491
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    ||||| ||||||||||| |||||||||||||| ||||||| ||||||| ||||||| |||||||||| ||||||||||| | ||||||| | ||||||||    
T  15798623 gcaagcaatgatacaatattacatgtaaatgatttatattccttaattgtttagatgtttgcatgttgatgttgtagttattagttttaggatttatgta 15798524  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||| |||||||| |||||| ||||||||    
T  15798523 taatttgcactccaagtgtttgatgaaatgttt 15798491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 3458508 - 3458639
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  |||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | |||||| |||||||||    
T  3458508 gcaagatatgacccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttaaagtttatgta 3458607  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  3458608 taatttgcactccaagtgtttgataaaatgtt 3458639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 16418626 - 16418495
Alignment:
Q  91 aagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtat 188  Q
    |||||||||||||||||| | ||||||||||||||| |||||||| | ||| ||| |||||||||||||||||||||||| |||||||  ||||||||||    
T  16418626 aagaaatgatacaatgtttatatgtaaatgacttatgttgcttaaatgttttgatgtttgcatgtttatgttgtagtttttagttttagagtttatgtat 16418527  T
Q  189 aatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||| |||||||| |||||| ||||||||    
T  16418526 aatttgcactccaagtgtttgatgaaatgttt 16418495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 25361127 - 25361010
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    ||||||||| |||||||||| |||  ||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| || |||||| |||||||||    
T  25361127 gcaagaaattatacaatgtttacaattaaatgaattatattgcttaattatttagatgtttgtatgtttatgttgtagttatgtgttttagggtttatgt 25361028  T
Q  187 ataatttgccctccaagt 204  Q
    ||||||||| ||||||||    
T  25361027 ataatttgcactccaagt 25361010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 7081962 - 7082080
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||||| |  || ||| |||||||||| ||||||||||| ||||||||| ||||||||    
T  7081962 gcaagatatgatacaatgttacatgcaaatgacttatcttgcttaattgtgtttggatgtttgcatgttaatgttgtagttatgagttttagggtttatg 7082061  T
Q  186 tataatttgccctccaagt 204  Q
    |||||||||| ||||||||    
T  7082062 tataatttgcactccaagt 7082080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 19400035 - 19400166
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  |||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| || |||||||    
T  19400035 gcaagatatgacccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggcttatgta 19400134  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  19400135 taatttgcactccaagtgtttgataaaatgtt 19400166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 40009200 - 40009331
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  |||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| | | ||||||    
T  40009200 gcaagatatgacccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttaggatctatgta 40009299  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||| | |||||||| |||||| |||||||    
T  40009300 taattttcactccaagtgtttgataaaatgtt 40009331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 2598891 - 2599023
Alignment:
Q  90 caagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||| |||||||||| ||||| ||||||| | | |||||||| | ||||||| |||||||||||||||||||||| ||||||||| | ||||||||    
T  2598891 caagaaatcatacaatgtttacatgaaaatgacctgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttatgagttttaggatttatgta 2598990  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||| | |||||| | |||||| ||||||||    
T  2598991 taatttacactccaaatgtttgatgaaatgttt 2599023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 17367278 - 17367156
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaat--------tatttagat-tttgcatgtttatgttgtagttttgagttttaagg 179  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||        | ||||||| |||||||||||||||||||||| | | ||||| |     
T  17367278 gcaagaaatgatacaatgttacatgtaaataacttatagtgcttaattgttatgatgtttagatgtttgcatgtttatgttgtagttatcatttttaggt 17367179  T
Q  180 tttatgtataatttgccctccaa 202  Q
    |||||||||||||||| ||||||    
T  17367178 tttatgtataatttgcactccaa 17367156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 33370321 - 33370458
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaat--tatttagat-tttgcatgttta---tgttgtagttttgagttttaaggttt 182  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||  | ||| ||| |||||||||| |   ||| |||||| ||||||||| ||| |    
T  33370321 gcaagaaatgatacaatgttacatgtaaatgacttatcttacttaattgtgtttggatgtttgcatgttaatattgtcgtagttatgagttttagggtat 33370420  T
Q  183 atgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||||||||| |||| ||| |||||| ||||||||    
T  33370421 atgtataatttgcactccgagtgtttgatgaaatgttt 33370458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 23229278 - 23229195
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgag 171  Q
    |||||||||||||||||||||||  ||||| ||||||||| | ||||| ||||||| |||||||||||||||||||||| ||||    
T  23229278 gcaagaaatgatacaatgttacacataaataacttatattacataattgtttagatatttgcatgtttatgttgtagttatgag 23229195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 8435710 - 8435825
Alignment:
Q  91 aagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtat 188  Q
    |||||||| | ||||||| |||||||||||| |||| ||| |||| | ||||||  ||||||||||| |||||||||||| ||||||| ||||||||| |    
T  8435710 aagaaatggttcaatgtttacatgtaaatgatttatgttgattaaatgtttagacgtttgcatgtttttgttgtagtttttagttttatggtttatgtgt 8435809  T
Q  189 aatttgccctccaagt 204  Q
    | ||||| ||||||||    
T  8435810 agtttgcactccaagt 8435825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 33370187 - 33370276
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    |||||||||  ||||||||| ||||||||||| ||| | || ||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  33370187 gcaagaaatcgtacaatgtttacatgtaaatggcttgtgttacttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 33370276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 4113602 - 4113555
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||    
T  4113602 gcaagaaatgatacaatgttacaagtaaatgacttatatttcttaatt 4113555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 17196009 - 17195970
Alignment:
Q  93 gaaatgatacaatgttacatgtaaatgacttatattgctt 132  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17196009 gaaatgatacaatgttacatgtaaatgacttatattgctt 17195970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 7081827 - 7081916
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | || ||||| | ||||| | |||||||||||| |||||||||||||||||||    
T  7081827 gcaagaaatcatacaatgttttcatgtaaatgacttgtgttacttaaatgtttaggtgtttgcatgtttacgttgtagttttgagtttta 7081916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 3458355 - 3458402
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  3458355 gcaagaaatgatagaatgttacatgcaaatgacttatagtgcttaatt 3458402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 19399895 - 19399942
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  19399895 gcaagaaatgatagaatgttacatgcaaatgacttatagtgcttaatt 19399942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 21290353 - 21290412
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt 204  Q
    |||||||||||||||| |||||||| ||||||  ||||||||||||||||| || |||||    
T  21290353 tttgcatgtttatgttatagttttgcgttttagagtttatgtataatttgcacttcaagt 21290412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 36312608 - 36312553
Alignment:
Q  106 gttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgtt 160  Q
    ||||||||||||||||||||||| || |||| ||||||| ||||||||||||||||    
T  36312608 gttacatgtaaatgacttatatttctcaattgtttagatgtttgcatgtttatgtt 36312553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 34595063 - 34595105
Alignment:
Q  152 gtttatgttgtagttttgagttttaaggtttatgtataatttg 194  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  34595063 gtttatgttgtagttttgagttttagagtttatgtataatttg 34595105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 12742308 - 12742339
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||||||||||||||||||||||||||    
T  12742308 tttgcatgtttatgttgtagttttgagtttta 12742339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 12805127 - 12805158
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||||||||||||||||||||||||||    
T  12805127 tttgcatgtttatgttgtagttttgagtttta 12805158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 40009079 - 40009126
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    |||||| |||||| ||||||||||| |||||||||||| |||||||||    
T  40009079 gcaagagatgatagaatgttacatgcaaatgacttatagtgcttaatt 40009126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 21760902 - 21760769
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  21760902 gcaagaaatgatacaatgtttatatgtaaatgacttatattgcttaattgtttagatgtttgcatgtttatattgtagttatgagttttaaggtttatgt 21760803  T
Q  187 ataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||||| || ||||| |||||| ||||||||    
T  21760802 ataatttgcacttcaagtgtttgatgaaatgttt 21760769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 48707450 - 48707333
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |||||||||    
T  48707450 gcaagaaatgatacaatgtttaaatgtaaatgacttatattgcttaattgtttagatgtttgcatgtttatgttgtagttatgagttttagggtttatgt 48707351  T
Q  187 ataatttgccctccaagt 204  Q
    ||||||||| ||||||||    
T  48707350 ataatttgcactccaagt 48707333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 21485167 - 21485035
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||| | ||||||| ||||||||||    
T  21485167 gcaagatatgatacaatgttacatgcaaatgacttatattgcttaattgtttagatgtttgcatgtttatattgtagttattagttttagggtttatgta 21485068  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||| || ||||| |||||| ||||||||    
T  21485067 taatttgcactgcaagtgtttgatgaaatgttt 21485035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 49599396 - 49599265
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  49599396 gcaagatatgatacaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 49599297  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  49599296 taatttgcactccaagtgtttgataaaatgtt 49599265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 27259603 - 27259734
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||||| ||||||||| |||||| ||    
T  27259603 gcaagaaatgatacaatgtttacatgtaaatgacttaaattgcttaattatttagatgtttgcatg--tatgttgtagttgtgagttttagggtttacgt 27259700  T
Q  187 ataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||| |||||||||| |||||| ||||||||    
T  27259701 ataattttccctccaagtgtttgatgaaatgttt 27259734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 5764877 - 5765011
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaat--tatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  | ||||||| |||||| ||| ||||||||||| |||| |||| ||||||||    
T  5764877 gcaagaaatgatacaatgttacatgtaaatgacttatgttgcttaattgtgtttagatgtttgcacgttaatgttgtagttatgaggtttagggtttatg 5764976  T
Q  186 tataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||||| |||||||| |||||| ||||||||    
T  5764977 tataatttgcactccaagtgtttgatgaaatgttt 5765011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 46182086 - 46181955
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| |||||||||     
T  46182086 gcaagatatgatacaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgtt 46181987  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  46181986 taatttgcactccaagtgtttgataaaatgtt 46181955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 3658331 - 3658431
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  3658331 gcaagatatgatacaacgttacatgcaaatgacttatattgcttaattgtttagatatttgcatgtttatgttgtagttatgagttttagggtttatgta 3658430  T
Q  188 t 188  Q
    |    
T  3658431 t 3658431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 41875422 - 41875291
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||||||||||| |||||| | |||||| |||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  41875422 gcaagatatgatacaatgttacatgcaaatgagtaatattggttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 41875323  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||| | |||||||| |||||| |||||||    
T  41875322 taattttcactccaagtgtttgataaaatgtt 41875291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 48568942 - 48568811
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||| ||||||| ||| || | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  48568942 gcaagatatgatacaatattacatgcaaacgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 48568843  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  48568842 taatttgcactccaagtgtttgataaaatgtt 48568811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 18842110 - 18842225
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |  || ||| |||||||||| || |||||||| ||||||||| ||||||||    
T  18842110 gcaagaaatgatacaatgttacatgtaaatgacttatcttgcttaattgtgtttggatgtttgcatgttaatattgtagttatgagttttagggtttatg 18842209  T
Q  186 tataatttgccctcca 201  Q
    |||||||||| |||||    
T  18842210 tataatttgcactcca 18842225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 17696722 - 17696829
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||||||||||  | |||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  17696722 gcaagatatgatacaatgttacatccagatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 17696821  T
Q  188 taatttgc 195  Q
    ||||||||    
T  17696822 taatttgc 17696829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 27035830 - 27035719
Alignment:
Q  109 acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tt 206  Q
    ||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| |||||||||||||||||| |||||||| ||    
T  27035830 acatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgtataatttgcactccaagtgtt 27035731  T
Q  207 tgattaaatgtt 218  Q
    |||| |||||||    
T  27035730 tgataaaatgtt 27035719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 34335877 - 34336008
Alignment:
Q  91 aagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtat 188  Q
    |||||||||||||||||| || |||||||||||||| |||||||| | ||||||| ||||||||||| |||||||||||| | ||||| | |||||||||    
T  34335877 aagaaatgatacaatgtttacttgtaaatgacttatgttgcttaaatgtttagatgtttgcatgtttgtgttgtagtttttaattttaggatttatgtat 34335976  T
Q  189 aatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||| ||| |||| |||||| ||||||||    
T  34335977 aatttgcactctaagtgtttgatgaaatgttt 34336008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 18169701 - 18169814
Alignment:
Q  94 aaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataa 190  Q
    |||||||||||||||||||| ||||||||||| |||||||||| |  || ||| |||||||||| |||||||||||  |||||||| |||||||||||||    
T  18169701 aaatgatacaatgttacatgcaaatgacttatcttgcttaattgtgtttggatgtttgcatgttaatgttgtagttacgagttttagggtttatgtataa 18169800  T
Q  191 tttgccctccaagt 204  Q
    ||||| ||||||||    
T  18169801 tttgcactccaagt 18169814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 25804098 - 25803967
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||| |||| || ||||||||||||||| ||| ||||||||||||  ||||||||    
T  25804098 gcaagaaatgatacaatgtttacatgtaaatgacttatgtt-cttaattgtttaaatgtttgcatgtttatgt-gtacttttgagttttagagtttatgt 25804001  T
Q  187 ataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||| |||| |||||||| |||||| ||||||||    
T  25804000 ataagttgcactccaagtgtttgatgaaatgttt 25803967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 50068792 - 50068661
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  |||||| ||||| |||||| | ||||||||||||| ||||||| |||||||||||||||||||||| | | ||||| |||||||| |    
T  50068792 gcaagatatgactcaatgtaacatgcaaatgagtaatattgcttaattgtttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgca 50068693  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  50068692 taatttgcactccaagtgtttgataaaatgtt 50068661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 48569083 - 48568994
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  48569083 gcaagaaatcatacaatgtttgcatgtaaatgacttgtgttgcttaaatatttagatgtttgcatgtttatgttgtagttttgagtttta 48568994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 30310360 - 30310242
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    |||||| |||||||||||||||||| ||||||||||| || ||||| | |  || ||| |||||||||| ||||| ||||| ||||||||| ||||||||    
T  30310360 gcaagatatgatacaatgttacatgcaaatgacttatcttacttaactgtgtttggatgtttgcatgttaatgttatagttatgagttttagggtttatg 30310261  T
Q  186 tataatttgccctccaagt 204  Q
    |||||||||| ||||||||    
T  30310260 tataatttgcactccaagt 30310242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 45688827 - 45688925
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||||| ||||  |||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| |||||||||    
T  45688827 gcaagatatgagccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgt 45688925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 3658195 - 3658284
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| |||||||||| |||||||||||| || | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  3658195 gcaagaaatcatacaatgtttacatgtaaatgatttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 3658284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 39224882 - 39224793
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  39224882 gcaagaaatcatacaatgttttcatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 39224793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 26089013 - 26089088
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgta 163  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  26089013 gcaagaaatgataaaatgttatacgtaaatgacttatattgcttaattgtttagatgtttgcaagtttatgttgta 26089088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 18169561 - 18169651
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaa 177  Q
    ||||||||| ||||||||||  |||||||||||||| | |||||||| | ||||||| ||||||| |||||||||||||||||||||||||    
T  18169561 gcaagaaatcatacaatgttttcatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatctttatgttgtagttttgagttttaa 18169651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 26793039 - 26793113
Alignment:
Q  146 ttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||  |||||||| |||||| ||||||||    
T  26793039 ttgcatgtttatgttgtagtttttagttttagggtttatgtataatttgtactccaagtgtttgatgaaatgttt 26793113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 41875557 - 41875468
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagatt-ttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | |||||||| | |||||||  |||||||||||||||||||||||||||||||    
T  41875557 gcaagaaatcatacaatgtttgcatgtaaatgacttgtgttgcttaaatgtttagatgcttgcatgtttatgttgtagttttgagtttta 41875468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 46182222 - 46182133
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||| ||||||  |||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  46182222 gcaagaaatcataaaatgtttgcatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 46182133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 47488554 - 47488478
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtag 164  Q
    |||||| ||||  |||||||||||| |||||| | ||||||||||||||||||||| ||||||||||||||||||||    
T  47488554 gcaagatatgacccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtag 47488478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 15471241 - 15471296
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat 144  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  15471241 gcaataaatgatacaatgttacatgtaaatgacttatattgcctaattgtttagat 15471296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 49599513 - 49599447
Alignment:
Q  111 atgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  49599513 atgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 49599447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 12026265 - 12026340
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||||||||||||||||| | ||||||| |||||||||||||||| | || ||||| |||||| ||||||||    
T  12026265 tttgcatgtttatgttgtagttcttagttttagggtttatgtataattttcacttcaagtgtttgatgaaatgttt 12026340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 21485305 - 21485214
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatat--tgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| |||||||||| |||||||||| |||| | |  ||||||| | ||||||| ||||||||||||| ||||||||||||||||||    
T  21485305 gcaagaaatcatacaatgtttacatgtaaatcacttgtgtgttgcttaaatgtttagatgtttgcatgtttatattgtagttttgagtttta 21485214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 50068932 - 50068885
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  50068932 gcaagaaatgatagaatgttacatgcaaatgacttatagtgcttaatt 50068885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 39224668 - 39224614
Alignment:
Q  150 atgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt 204  Q
    ||||| ||| ||||||| ||||||||| |||||||||||||||||| ||||||||    
T  39224668 atgttaatgctgtagttatgagttttagggtttatgtataatttgcactccaagt 39224614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 39224745 - 39224699
Alignment:
Q  90 caagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||    
T  39224745 caagatatgatacaatgttacatgcaaatgacttattttgcttaatt 39224699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 5764741 - 5764830
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagatttt-gcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||| ||  |||| ||||||||| | |||||||| | ||||||| || ||||||||||||||||||||| |||||||    
T  5764741 gcaagaaatcatacaatattttcatgaaaatgacttgtgttgcttaaatgtttagatgttcgcatgtttatgttgtagttttcagtttta 5764830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 27799405 - 27799446
Alignment:
Q  163 agttttgagttttaaggtttatgtataatttgccctccaagt 204  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  27799405 agtttttagttttaaggtttatgtataatttgcactccaagt 27799446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 17696579 - 17696623
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgctta 133  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||    
T  17696579 gcaagaaatgatagaatgttacatgcaaatgacttatagtgctta 17696623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 27799292 - 27799364
Alignment:
Q  89 gcaagaaatgatacaatg-ttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgt 159  Q
    |||||||||||||||||| ||| |||||||||| |||| || ||||| | ||||||| |||||||||||||||    
T  27799292 gcaagaaatgatacaatgtttaaatgtaaatgaattatgtttcttaaatgtttagatgtttgcatgtttatgt 27799364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 31452226 - 31452150
Alignment:
Q  144 ttttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||| |||||||| || || ||| ||||| |||||||||||||||||| ||| |||| |||||| ||||||||    
T  31452226 ttttgcatatttatgttataattatgatttttagggtttatgtataatttgcactctaagtgtttgatgaaatgttt 31452150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 11821528 - 11821575
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||||||||| | |||||||    
T  11821528 gcaagaaatgatagaatgttacatgcaaatgacttatagtacttaatt 11821575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 47488693 - 47488646
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||| ||||||| |||||||||||| |||||||||    
T  47488693 gcaagaaatgatagaatattacatgcaaatgacttatagtgcttaatt 47488646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 12025848 - 12025894
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaa 134  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||    
T  12025848 gcaagaaatgatacaatatttacatgtaaatgacttatgttgcttaa 12025894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 16532490 - 16532442
Alignment:
Q  172 ttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||| |||||||||||||||||| |||||||| |||||| ||||||||    
T  16532490 ttttagggtttatgtataatttgcactccaagtgtttgatgaaatgttt 16532442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 19262854 - 19262778
Alignment:
Q  144 ttttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||||||| ||||| ||||| ||| |||||  |||||||||||||||||  | ||||| |||||| ||||||||    
T  19262854 ttttgcatgttcatgttatagttatgatttttagagtttatgtataatttgcatttcaagtgtttgatgaaatgttt 19262778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 36336 - 36468
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| |||| | ||||||||    
T  36336 gcaagaaataatacaacgttacatgtaaatgacttatattgcttaattgtttagatgtttgcatgtttatgttgtagttatgagatttaggatttatgta 36435  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||| |||||||| |||||| ||||||||    
T  36436 taatttgcactccaagtgtttgatgaaatgttt 36468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 48088089 - 48087958
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  48088089 gcaagatatgatacaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 48087990  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  48087989 taatttgcactccaagtgtttgataaaatgtt 48087958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 1639138 - 1639030
Alignment:
Q  89 gcaagaaatgatacaatgt-tacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||||| |||||||||    
T  1639138 gcaagaaatgatacaatgtgtacatctaaatgacttatatttcttaattgtttagatgtttgcatgtttatgttgtagttatgagttttagggtttatgt 1639039  T
Q  187 ataatttgc 195  Q
    |||||||||    
T  1639038 ataatttgc 1639030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 25577122 - 25576991
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| || ||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  25577122 gcaagatataatacaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 25577023  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| |||||||| |||||| |||||||    
T  25577022 taatttgcactccaagtgtttgataaaatgtt 25576991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 33449674 - 33449542
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||| ||  ||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  33449674 gcaagatatgatacaatcttacatgcaaatgacttatattgcttaattgttatgatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 33449575  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||| |||||||| |||||| ||||||||    
T  33449574 taatttgcactccaagtgtttgatgaaatgttt 33449542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 42381958 - 42382089
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||| |||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  42381958 gcaagatatgatccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 42382057  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| ||| |||| |||||| |||||||    
T  42382058 taatttgcactctaagtgtttgataaaatgtt 42382089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 42382738 - 42382869
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||| |||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  42382738 gcaagatatgatccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 42382837  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||| ||| |||| |||||| |||||||    
T  42382838 taatttgcactctaagtgtttgataaaatgtt 42382869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 774869 - 774738
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagattt-tgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    ||||||| |||| ||||||| |||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||| | | ||||||||||||||||    
T  774869 gcaagaagtgatgcaatgttgcatgtaaatgacttatattgattaattgtttagatgtgtgcatgtttatgttgtagttataatttttaaggtttatgta 774770  T
Q  188 taatttgccctccaagttttgattaaatgttt 219  Q
     ||||||| |||||   |||||| ||||||||    
T  774769 aaatttgcactccagtgtttgatgaaatgttt 774738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 37281137 - 37281255
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||||| |  || ||| |||||||||| ||||||||||| ||||||||| ||||||||    
T  37281137 gcaagatatgatacaatgttacatgcaaatgacttatcttgcttaattgtgtttggatgtttgcatgttaatgttgtagttatgagttttagggtttatg 37281236  T
Q  186 tataatttgccctccaagt 204  Q
    |||||||||| ||||||||    
T  37281237 tataatttgcactccaagt 37281255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 39417485 - 39417354
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||||||||||| |||||| | ||||||||||||||||| ||| |||| ||||||||||||||||| | | ||||| ||||||||||    
T  39417485 gcaagatatgatacaatgttacatgcaaatgagtaatattgcttaattattttgatgtttgtatgtttatgttgtagttatcatttttagggtttatgta 39417386  T
Q  188 taatttgccctccaagt-tttgattaaatgtt 218  Q
    |||||||  |||||||| |||||| |||||||    
T  39417385 taatttgaactccaagtgtttgataaaatgtt 39417354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 17370487 - 17370593
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| || | | ||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  17370487 gcaagaaatgatacgatgtttacatgtaaatgacttatgttgtttgaatgtttagatgtttgcatgtttatgttgtagttttgagttttagggtttatgt 17370586  T
Q  187 ataattt 193  Q
    |||||||    
T  17370587 ataattt 17370593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 42950539 - 42950421
Alignment:
Q  102 caatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctcc 200  Q
    |||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| |||||||||||||||||  ||||    
T  42950539 caatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgtataatttgtactcc 42950440  T
Q  201 aagt-tttgattaaatgtt 218  Q
    |||| |||||| |||||||    
T  42950439 aagtgtttgataaaatgtt 42950421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 29635455 - 29635322
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||||| | ||||||| ||||||||||| |||| ||||||| ||||||| ||| |||||    
T  29635455 gcaagaaattatacaatgtttacatgtaaatgacttatgttgcttaaatgtttagatgtttgcatgtttgtgttttagtttttagttttagggtgtatgt 29635356  T
Q  187 ataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||||| || ||||| |||||| ||||||||    
T  29635355 ataatttgcacttcaagtgtttgatgaaatgttt 29635322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 47065374 - 47065479
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| |||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||| ||||||||||||| | | ||||| ||||||||||    
T  47065374 gcaagatatgatacaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatggttatgttgtagttatcatttttagggtttatgta 47065473  T
Q  188 taattt 193  Q
    ||||||    
T  47065474 taattt 47065479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 15636711 - 15636843
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagatttt-gcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    ||||||||  |||| ||||||||||||||||| ||||||||||||||| || |||| || ||||||||||||||||||| |||||| || ||||||||||    
T  15636711 gcaagaaagtatacgatgttacatgtaaatgaattatattgcttaattgttaagatgttcgcatgtttatgttgtagttatgagttatagggtttatgta 15636810  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||| || ||| | |||||| ||||||||    
T  15636811 taatttgcacttcaactatttgatgaaatgttt 15636843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 6464879 - 6464745
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaat--tatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||  | ||||||| ||| |||||| || |||||||| ||||||||| ||||||||    
T  6464879 gcaagaaatgatacaatgttacatgtaattgacttatgttgcttaattgtgtttagatgtttccatgttaattttgtagttatgagttttagggtttatg 6464780  T
Q  186 tataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||||   ||||||| |||||| ||||||||    
T  6464779 tataatttgttgtccaagtgtttgatgaaatgttt 6464745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 14265096 - 14265227
Alignment:
Q  91 aagaaatgatacaatgt-tacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtat 188  Q
    ||||||| ||||||||| |||||| ||||||| | | |||||||| | ||||||| ||| |||||||||||||||||| ||||||||| |||||||||||    
T  14265096 aagaaatcatacaatgtgtacatgaaaatgacctgtgttgcttaaatgtttagatgttttcatgtttatgttgtagttatgagttttagggtttatgtat 14265195  T
Q  189 aatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||| |||||||| |||||| ||||||||    
T  14265196 aatttgcactccaagtatttgatgaaatgttt 14265227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 19236979 - 19237103
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||||||||||||||||||||||||||||||||||||||        ||||||| |||||||||||||||||||||| ||||||||| ||||||| ||    
T  19236979 gcaagaaatgatacaatgttacatgtaaatgacttatattg--------tttagatgtttgcatgtttatgttgtagttatgagttttagggtttatata 19237070  T
Q  188 taatttgccctcc-aagttttgattaaatgttt 219  Q
    || ||||| |||| || ||||||| ||||||||    
T  19237071 tattttgcactccaaatttttgatgaaatgttt 19237103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 36721897 - 36721779
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattattta--gat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||||| | |   ||| |||||||||| ||||||||||| ||||||||| ||||||||    
T  36721897 gcaagatatgatacaatgttacatgcaaatgacttatcttgcttaattgtgttcggatgtttgcatgttaatgttgtagttatgagttttagggtttatg 36721798  T
Q  186 tataatttgccctccaagt 204  Q
    |||||||||| ||||||||    
T  36721797 tataatttgcactccaagt 36721779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 53827215 - 53827097
Alignment:
Q  102 caatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctcc 200  Q
    |||||||||||| |||||| | ||||||||||||||||||||| |||||| ||| ||||||||||| | | ||||| |||||||||||||||||| ||||    
T  53827215 caatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcacgttcatgttgtagttatcatttttagggtttatgtataatttgcactcc 53827116  T
Q  201 aagt-tttgattaaatgtt 218  Q
    |||| |||||| |||||||    
T  53827115 aagtgtttgataaaatgtt 53827097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 44836019 - 44835903
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  |||||||||||| |||||| | ||||||||||||||||||||| ||||||||||||| |||||||| | | ||||| ||||||||||    
T  44836019 gcaagatatgacccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatattgtagttatcatttttagggtttatgta 44835920  T
Q  188 taatttgccctccaagt 204  Q
    ||||| || ||||||||    
T  44835919 taattggcactccaagt 44835903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 7953888 - 7954022
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |  || ||| |||||||||| ||||||| ||| ||| ||||| ||||||||    
T  7953888 gcaagaaatgatacaatgttacatgtaaatgacttatgttgcttaattgtgtttggatgtttgcatgttaatgttgttgttatgacttttagggtttatg 7953987  T
Q  186 tataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||| |   |||||||| |||||| ||||||||    
T  7953988 tataatgtttactccaagtgtttgatgaaatgttt 7954022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 6753889 - 6753997
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaat--tatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    |||||||||||||||||||| |||||||  ||||||| |||||||||  | ||||||| ||| |||||| || |||||||| ||||||||| ||||||||    
T  6753889 gcaagaaatgatacaatgttccatgtaatagacttatgttgcttaattgtgtttagatgtttccatgttaattttgtagttatgagttttagggtttatg 6753988  T
Q  186 tataatttg 194  Q
    |||||||||    
T  6753989 tataatttg 6753997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 39417627 - 39417538
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||||| || ||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  39417627 gcaagaaatcatacaatgtttgcatgtaaatgacttatgtttcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 39417538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 55391307 - 55391189
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagt---tttgagttttaaggttta 183  Q
    |||||||| ||||||||||| | |||||||||| |||| |||||||| | ||||||| |||||||||||||||||||||   ||| ||||||| | ||||    
T  55391307 gcaagaaacgatacaatgtttatatgtaaatgaattatgttgcttaaatgtttagatgtttgcatgtttatgttgtagtagtttttagttttatgattta 55391208  T
Q  184 tgtataatttgccctccaa 202  Q
    |||||||||||| ||||||    
T  55391207 tgtataatttgcactccaa 55391189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 13626533 - 13626595
Alignment:
Q  99 atacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgt 159  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13626533 atacaatgtttacatgtaaatgacttatattgcttaattatttagatgtttgcatgtttatgt 13626595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 19236838 - 19236927
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    |||||| || |||||||||| ||||| ||||||||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  19236838 gcaagagatcatacaatgtttacatgaaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 19236927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 25577259 - 25577170
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    |||| |||| ||||||||||  |||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  25577259 gcaataaatcatacaatgtttgcatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 25577170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 37281001 - 37281090
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| |||||| |||  |||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  37281001 gcaagaaatcatacaacgttttcatgtaaatgacttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 37281090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 8633931 - 8633884
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8633931 gcaagaaatgatacaatgttacatgtaaatgacttatcttgcttaatt 8633884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 6465016 - 6464927
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||| |||||| || | |||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  6465016 gcaagaaatcatacaatgttttcatgaaaatgatttgtgttgcttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttta 6464927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 6753753 - 6753842
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||| ||||||||| | |||||||| | ||||||| |||||||||| |||||||||||||||||||||    
T  6753753 gcaagaaatcatacaatgttttcatgaaaatgacttgtgttgcttaaatgtttagatgtttgcatgttaatgttgtagttttgagtttta 6753842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 36722029 - 36721940
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagatt-ttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  |||||||||||||| | ||| |||| | |||||||  |||||||||||||||||||||||||||||||    
T  36722029 gcaagaaatcatacaatgttttcatgtaaatgacttgtgttgattaaatgtttagatgcttgcatgtttatgttgtagttttgagtttta 36721940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 48088225 - 48088136
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||| ||||||||||  ||||||||||| || | |||||||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  48088225 gcaagaaatcatacaatgtttgcatgtaaatgatttgtgttgcttaaatgtttagatgtttgcatgtatatgttgtagttttgagtttta 48088136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 7953752 - 7953840
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagatttt-gcatgtttatgttgtagttttgagtttt 175  Q
    ||||||||| ||||||||||  |||| ||||||||| | ||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  7953752 gcaagaaatcatacaatgttttcatgaaaatgacttgtgttgcttaaaagtttagatttttgcatgtttatgttgtagttttgagtttt 7953840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 17267774 - 17267715
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt 204  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||||||||||  |||||||    
T  17267774 tttgcatgtttatgttgtagtttcgagttttagggtatatgtataatttgcattccaagt 17267715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 8634066 - 8633977
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttta 176  Q
    |||| |||| |||||||||| ||||| ||||||| | | |||||||| | ||||||| |||| |||||||||||||||||||||||||||    
T  8634066 gcaataaatcatacaatgtttacatgaaaatgacctgtgttgcttaaatgtttagatgtttgtatgtttatgttgtagttttgagtttta 8633977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 50343091 - 50343031
Alignment:
Q  144 ttttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt 204  Q
    |||| |||||||||||| ||||| ||| ||||| |||||||||||||||||| ||||||||    
T  50343091 tttttcatgtttatgttatagttatgatttttagggtttatgtataatttgcactccaagt 50343031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 33449825 - 33449778
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  33449825 gcaagaaatgatagaatgttacatgcaaatgacttatagtgcttaatt 33449778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 42381820 - 42381867
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||    
T  42381820 gcaagaaatgatagaatgttacatgcaaatgatttatattgcttaatt 42381867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 42382600 - 42382647
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||    
T  42382600 gcaagaaatgatagaatgttacatgcaaatgatttatattgcttaatt 42382647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 53827369 - 53827322
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  53827369 gcaagaaatgatagaatgttacatgcaaatgacttatagtgcttaatt 53827322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 47065236 - 47065286
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatt 139  Q
    ||||| ||||||| ||||||||||| |||||||||||| ||||||||||||    
T  47065236 gcaagtaatgatagaatgttacatgcaaatgacttatagtgcttaattatt 47065286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 8633834 - 8633775
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt 204  Q
    |||||||||| |||||||| || |||| |||| ||| |||||||||||||| ||||||||    
T  8633834 tttgcatgttaatgttgtaattatgagctttagggtatatgtataatttgcactccaagt 8633775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 15636635 - 15636666
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||||||||||||||||||||||||||    
T  15636635 tttgcatgtttatgttgtagttttgagtttta 15636666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 22843872 - 22843755
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgt 186  Q
    |||||||||| ||||||||| ||||||||||||||| | |||||||| | ||||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  22843872 gcaagaaatggtacaatgtttacatgtaaatgacttttgttgcttaaatgtttagatgtttgcatgtttatgttgtagtttttagttttagggtttatgt 22843773  T
Q  187 ataatttgccctccaagt 204  Q
    ||||||||| ||||||||    
T  22843772 ataatttgcactccaagt 22843755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 28706673 - 28706541
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    |||||| ||||  |||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||    
T  28706673 gcaagatatgacccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgta 28706574  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||| |||||||| |||||| ||||||||    
T  28706573 taatttgcactccaagtgtttgataaaatgttt 28706541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 12505242 - 12505120
Alignment:
Q  99 atacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccc 197  Q
    |||||||||||  ||||||||||||||||  || |||| ||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| |    
T  12505242 atacaatgttaattgtaaatgacttatatcactaaattgtttagatgtttgcatgtttatgttgtagttatgagttttagggtttatgtataatttgcac 12505143  T
Q  198 tccaagt-tttgattaaatgttt 219  Q
    ||||||| |||||| ||||||||    
T  12505142 tccaagtgtttgatgaaatgttt 12505120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 16575375 - 16575507
Alignment:
Q  91 aagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |  || ||| |||| ||||| ||||||||||| ||||||||| ||||||||||    
T  16575375 aagaaatgatacaatgttacatgtaaatgacttatcttgcttaattgtgtttggatgtttgtatgttaatgttgtagttatgagttttagggtttatgta 16575474  T
Q  188 taatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||| | |||||||| |||||| ||||||||    
T  16575475 taatttacactccaagtgtttgatgaaatgttt 16575507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 43640537 - 43640434
Alignment:
Q  102 caatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctcc 200  Q
    |||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||| | | ||||| |||||||||||||||||| ||||    
T  43640537 caatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtagttatcatttttagggtttatgtataatttgcactcc 43640438  T
Q  201 aagt 204  Q
    ||||    
T  43640437 aagt 43640434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 14998648 - 14998553
Alignment:
Q  90 caagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttat 184  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||||||| |||| |||||||||| ||||||    
T  14998648 caagaaaggatacaatgtcacatgtaaatgacttatattgcttaattggttagatgtttgcatgtttatgttgaagttatgagttttaatgtttat 14998553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 43692818 - 43692936
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||||| |  || ||| |||||||||| ||||||||||| ||||||||| ||||||||    
T  43692818 gcaagatatgatacaatgttacatgcaaatgacttatcttgcttaattgtgtttggatgtttgcatgttaatgttgtagttatgagttttagggtttatg 43692917  T
Q  186 tataatttgccctccaagt 204  Q
    ||||||||||  |||||||    
T  43692918 tataatttgcattccaagt 43692936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 8751507 - 8751582
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||| ||||||||    
T  8751507 tttgtatgtttatgttgtagttatgagttttagggtttatgtataatttgcactccaagtgtttgatcaaatgttt 8751582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 24630423 - 24630305
Alignment:
Q  89 gcaagaaatgatacaatg-ttacatgtaaatgacttatatt-gcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatg 185  Q
    |||| |||| |||||||| ||| |||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| || |||| | |||||     
T  24630423 gcaaaaaattatacaatgcttatatgtaaatgacttatatttgcttaattgtttagatgtttgcatgtttatgttgtagtttttaggtttatgctttata 24630324  T
Q  186 tataatttgccctccaagt 204  Q
    ||||| || | ||||||||    
T  24630323 tataactttcactccaagt 24630305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 33800069 - 33799993
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtag 164  Q
    |||||| ||||  |||||||||||| |||||| | ||||||||||||||||||||| ||||||||||||||||||||    
T  33800069 gcaagatatgacccaatgttacatgcaaatgagtaatattgcttaattatttagatgtttgcatgtttatgttgtag 33799993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 43692683 - 43692771
Alignment:
Q  89 gcaagaaatgatacaatgtta-catgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagtttt 175  Q
    ||||||||| ||||||||||  |||||||||||||| | || ||||| | ||||||| |||||||||||||||||||||||||||||||    
T  43692683 gcaagaaatcatacaatgttttcatgtaaatgacttgtgttacttaaatgtttagatgtttgcatgtttatgttgtagttttgagtttt 43692771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 40414350 - 40414409
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt 204  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  40414350 tttgcatgttaatgttgtagttatgagttttagggtttatgtataatttgcactccaagt 40414409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 27783186 - 27783260
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgtt 218  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||| |||| |||||| |||||||    
T  27783186 tttgcatgtttatattgtagttatgagttttagggtttatgtataatttgcactctaagtgtttgatgaaatgtt 27783260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 12785749 - 12785618
Alignment:
Q  91 aagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtat 188  Q
    |||||||||| |||| || ||||||||||   |||| ||| |||| ||||||||| |||||||||||||||||| ||||| || |||| |||||| ||||    
T  12785749 aagaaatgattcaatttttacatgtaaatatattatgttgattaaatatttagatgtttgcatgtttatgttgttgtttttagctttagggtttaagtat 12785650  T
Q  189 aatttgccctccaagt-tttgattaaatgttt 219  Q
    | ||||| |||||| | |||||| ||||||||    
T  12785649 attttgcactccaattgtttgatgaaatgttt 12785618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 16575236 - 16575323
Alignment:
Q  89 gcaagaaatgatacaatgtt-acatgtaaatgacttatattgcttaattatttagatt-ttgcatgtttatgttgtagttttgagttt 174  Q
    ||||||||| |||||||||| ||||| ||||||||| | || ||||| | |||||||  |||||||||||||||||||||||||||||    
T  16575236 gcaagaaatcatacaatgtttacatgaaaatgacttgtgttacttaaatgtttagatgcttgcatgtttatgttgtagttttgagttt 16575323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 3589723 - 3589653
Alignment:
Q  150 atgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    ||||||||||| ||||| ||| ||||| |||||||||||||||||  |||||||| |||||| ||||||||    
T  3589723 atgtttatgttatagttatgatttttagggtttatgtataatttgtactccaagtgtttgatgaaatgttt 3589653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 28706812 - 28706765
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||| ||| ||||||||||| |||||||||||| |||||||||    
T  28706812 gcaagaaataatagaatgttacatgcaaatgacttatagtgcttaatt 28706765  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 33800204 - 33800157
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||| ||| ||||||||||| |||||||||||| |||||||||    
T  33800204 gcaagaaatcatagaatgttacatgcaaatgacttatagtgcttaatt 33800157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 43640681 - 43640634
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||  |||||||||||| |||||||||    
T  43640681 gcaagaaatgatagaatgttacatacaaatgacttatagtgcttaatt 43640634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 31172291 - 31172215
Alignment:
Q  144 ttttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||  ||||| || ||||| ||| ||||| |||||||||||||||| | |||||||| |||||| ||||||||    
T  31172291 ttttgcacttttattttatagttatgatttttagggtttatgtataatttacactccaagtgtttgatgaaatgttt 31172215  T

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Target: scaffold0121 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 5017 - 5121
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgta 187  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| || ||||||| |||| |||||||||||| |||  ||||||||| ||||||||||    
T  5017 gcaagaaatgatacagtgttacacgtaaatgacttatattgcttatttgtttagatgtttgtatgtttatgttgcagtaatgagttttagggtttatgta 5116  T
Q  188 taatt 192  Q
    |||||    
T  5117 taatt 5121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 4879 - 4948
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaattatttagat-tttgcatgtttat 157  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||||||||    
T  4879 gcaagaaatgatacaatgttacatgtaaatgacgtgtattgtttaattgtttagatatttgcatgtttat 4948  T

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Target: scaffold0004 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 39561 - 39682
Alignment:
Q  102 caatgttacatgtaaatgacttatattgcttaattat--ttagat-tttgcatgtttatgttgtagttttgagttttaaggtttatgtataatttgccct 198  Q
    |||||||||||||||||||||||| |||||||||| |  || ||| |||||||||| ||||||||||| ||||||||| |||||| ||||||||||| ||    
T  39561 caatgttacatgtaaatgacttatcttgcttaattgtgtttggatgtttgcatgttaatgttgtagttatgagttttagggtttacgtataatttgcact 39660  T
Q  199 ccaagt-tttgattaaatgttt 219  Q
    |||||| |||||| ||||||||    
T  39661 ccaagtgtttgatgaaatgttt 39682  T

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Target: scaffold0004; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 39483 - 39514
Alignment:
Q  145 tttgcatgtttatgttgtagttttgagtttta 176  Q
    ||||||||||||||||||||||||||||||||    
T  39483 tttgcatgtttatgttgtagttttgagtttta 39514  T

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Target: scaffold0294 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 746 - 813
Alignment:
Q  153 tttatgttgtagttttgagttttaaggtttatgtataatttgccctccaagt-tttgattaaatgttt 219  Q
    |||||||||||||||| ||||||| | |||||||||| ||||| |||||||| |||||||||||||||    
T  746 tttatgttgtagttttaagttttaggatttatgtatattttgcactccaagtgtttgattaaatgttt 813  T

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Target: scaffold1763 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 54 - 7
Alignment:
Q  89 gcaagaaatgatacaatgttacatgtaaatgacttatattgcttaatt 136  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  54 gcaagaaatgatagaatgttacatgcaaatgacttatagtgcttaatt 7  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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