View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18064_low_1 (Length: 526)

Name: NF18064_low_1
Description: NF18064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18064_low_1
NF18064_low_1
[»] chr8 (13 HSPs)
chr8 (18-519)||(12646737-12647238)
chr8 (18-519)||(12651869-12652352)
chr8 (30-94)||(6117901-6117965)
chr8 (35-96)||(12711784-12711845)
chr8 (31-96)||(13024766-13024831)
chr8 (376-419)||(12516858-12516901)
chr8 (226-281)||(12724761-12724816)
chr8 (382-420)||(12724634-12724672)
chr8 (35-94)||(12705780-12705839)
chr8 (238-332)||(37830625-37830720)
chr8 (384-422)||(6117573-6117611)
chr8 (376-422)||(12705470-12705516)
chr8 (384-422)||(12712121-12712159)
[»] chr1 (3 HSPs)
chr1 (369-423)||(22535498-22535552)
chr1 (381-419)||(17747866-17747904)
chr1 (378-422)||(344828-344872)
[»] chr2 (3 HSPs)
chr2 (31-96)||(44912518-44912583)
chr2 (31-85)||(44918483-44918537)
chr2 (378-422)||(16920702-16920746)
[»] scaffold0129 (4 HSPs)
scaffold0129 (378-422)||(10184-10228)
scaffold0129 (24-85)||(33541-33602)
scaffold0129 (378-422)||(17472-17516)
scaffold0129 (378-422)||(33868-33912)
[»] chr5 (4 HSPs)
chr5 (378-422)||(27173761-27173805)
chr5 (377-423)||(42782928-42782974)
chr5 (377-423)||(40548983-40549029)
chr5 (377-423)||(41227652-41227698)
[»] chr6 (4 HSPs)
chr6 (377-422)||(32745205-32745250)
chr6 (378-423)||(25319622-25319667)
chr6 (378-423)||(26149315-26149360)
chr6 (377-422)||(32961072-32961117)
[»] scaffold0054 (2 HSPs)
scaffold0054 (378-422)||(33789-33833)
scaffold0054 (378-422)||(40140-40184)
[»] chr4 (2 HSPs)
chr4 (378-422)||(48742297-48742341)
chr4 (31-96)||(9569206-9569271)


Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Complemental strand, 12647238 - 12646737
Alignment:
Q  18 aatgtcaggtaaaggtccaacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaacccatatgtgactaaaagaagtcatgaggaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12647238 aatgtcaggtaaaggtccaacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaacccatatgtgactaaaagaagtcatgaggaca 12647139  T
Q  118 gtacaaatgaaagcaacagacccatttaataccaccaattttttctccaactttctgcgattgaaatcatagatagatgatactccctctaaggatgtct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12647138 gtacaaatgaaagcaacagacccatttaataccaccaattttttctccaactttctgcgattgaaatcatagatagatgatactccctctaaggatgtct 12647039  T
Q  218 ctttgctaaagtcaaatgaaggtaagtttgttacaaaaaatatctcattgataaagtcaaacgaccccatatcattatctaggttcaaccaatagcaaag 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12647038 ctttgctaaagtcaaatgaaggtaagtttgttacaaaaaatatctcattgataaagtcaaacgaccccatatcattatctaggttcaaccaatagcaaaa 12646939  T
Q  318 ttcattcaagttcacctgacaacgctcttcccaagaatcaggcataggtatatcaccaccatcaagtttcctccaagagttacttctgaggctgtatatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12646938 ttcattcaagttcacctgacaacgctcttcccaagaatcaggcataggtatatcaccaccatcaagtttcctccaagagttacttctgaggctgtatatc 12646839  T
Q  418 tcccaataatcaggatcatacatatttattggcacccccttccaaaaatcatcatcatcgtcaaaatccaagtccatctcccagaaagggctattcttct 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12646838 tcccaataatcaggatcatacatatttattggcacccccttccaaaaatcatcatcatcgtcaaaatccaagtccatctcccagaaagggctattcttct 12646739  T
Q  518 ct 519  Q
    ||    
T  12646738 ct 12646737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 519
Target Start/End: Complemental strand, 12652352 - 12651869
Alignment:
Q  18 aatgtcaggtaaaggtccaacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaacccatatgtgactaaaagaagtcatgaggaca 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  ||||||||||| | ||||||||  | ||| |||| ||||||||    
T  12652352 aatgtcaggtaaaggtccaacaacaaagagtttagtccacgattcctcaacaccaatttcacccaaaatcgatatgtgaaaataagcagtcttgaggaca 12652253  T
Q  118 gtacaaatgaaagcaacagacccatttaataccaccaattttttctccaactttctgcgattgaaatcatagatagatgatactccctctaaggatgtct 217  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||||||||||  |             ||||||||| |    
T  12652252 gtacaaatgaaagcaacatacccatttaataccaccaattttgtctccaacttcctccgattgaaatcatagaggg------------ttaaggatgtgt 12652165  T
Q  218 ctttgctaaagtcaaatgaaggtaagtttgttacaaaaaatatctcattgataaagtcaaacgaccccatatcattatctaggttcaaccaatagcaaag 317  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  ||||     
T  12652164 ctttgctaaagtcaaacgaaggtaagtttgttacaaaaaatatctcattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaa 12652065  T
Q  318 ttcattcaagttcacctgacaacgctcttcccaagaatcaggcataggtatatcaccaccatcaagtttcctccaagagttacttctgaggctgtatatc 417  Q
    ||||||||||||||| ||||||||||| |||||||||  ||||||   ||   || |||| |  ||||||||||||||||||||||||||||||||||||    
T  12652064 ttcattcaagttcacttgacaacgctcctcccaagaagaaggcat---ta---catcaccgttgagtttcctccaagagttacttctgaggctgtatatc 12651971  T
Q  418 tcccaataatcaggatcatacatatttattggcacccccttccaaaaatcatcatcatcgtcaaaatccaagtccatctcccagaaagggctattcttct 517  Q
    |||||||||| ||| |||||||||| ||||||||| |||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |||    
T  12651970 tcccaataattagggtcatacatatatattggcacaccctcccaaaaatcatcattatcatcaaattccaagtccatctcccagaaagggctattcatct 12651871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 6117965 - 6117901
Alignment:
Q  30 aggtccaacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaacccatatgt 94  Q
    ||||||||||||||| |||||| |||||||||| ||||||||| |||||||||||| ||||||||    
T  6117965 aggtccaacaacaaagagtttaatccacgattctttaacaccaagttcacccaaaatccatatgt 6117901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 12711784 - 12711845
Alignment:
Q  35 caacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaacccatatgtga 96  Q
    |||||||||| |||||| |||||||||| ||||||||  |||||||||||| ||||||||||    
T  12711784 caacaacaaagagtttaatccacgattctttaacaccgagttcacccaaaatccatatgtga 12711845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 13024766 - 13024831
Alignment:
Q  31 ggtccaacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaacccatatgtga 96  Q
    |||||||||||||| | ||||||||||||||| || |||||  |||||||||||||||| ||||||    
T  13024766 ggtccaacaacaaagaatttagtccacgattctttgacaccgagttcacccaaaacccaaatgtga 13024831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 419
Target Start/End: Original strand, 12516858 - 12516901
Alignment:
Q  376 ccatcaagtttcctccaagagttacttctgaggctgtatatctc 419  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||    
T  12516858 ccatcgagtttcctccaagagttacttctaaggctgtatatctc 12516901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 281
Target Start/End: Complemental strand, 12724816 - 12724761
Alignment:
Q  226 aagtcaaatgaaggtaagtttgttacaaaaaatatctcattgataaagtcaaacga 281  Q
    ||||||||||| |||||| ||||| |||| |||||||||||| |||||||||||||    
T  12724816 aagtcaaatgagggtaaggttgtttcaaagaatatctcattggtaaagtcaaacga 12724761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 12724672 - 12724634
Alignment:
Q  382 agtttcctccaagagttacttctgaggctgtatatctcc 420  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  12724672 agtttcctccaagagttacttctgaggctatatatctcc 12724634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 12705839 - 12705780
Alignment:
Q  35 caacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaacccatatgt 94  Q
    |||||||||| |||||| |||||||||| ||||||||   ||||||||||| ||||||||    
T  12705839 caacaacaaagagtttaatccacgattctttaacaccgacttcacccaaaatccatatgt 12705780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 37830720 - 37830625
Alignment:
Q  238 ggtaagtttgttacaaaa-aatatctcattgataaagtcaaacgaccccatatcattatctaggttcaaccaatagcaaagttcattcaagttcac 332  Q
    ||||| |||||||||||| || ||||||||| |||||||||| ||| |||||||||  | | ||| |||||||| |||   |||||||||||||||    
T  37830720 ggtaaatttgttacaaaagaacatctcattgttaaagtcaaatgacaccatatcatatttttggtccaaccaatggcaccattcattcaagttcac 37830625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 6117611 - 6117573
Alignment:
Q  384 tttcctccaagagttacttctgaggctgtatatctccca 422  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  6117611 tttcctccaagagttacttttgaggctatatatctccca 6117573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 422
Target Start/End: Complemental strand, 12705516 - 12705470
Alignment:
Q  376 ccatcaagtttcctccaagagttacttctgaggctgtatatctccca 422  Q
    ||||||| ||||||||||||||||||| ||||||| |||| ||||||    
T  12705516 ccatcaattttcctccaagagttacttttgaggctatataactccca 12705470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 12712121 - 12712159
Alignment:
Q  384 tttcctccaagagttacttctgaggctgtatatctccca 422  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  12712121 tttcctccaagagttacttttgaggctatatatctccca 12712159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 423
Target Start/End: Original strand, 22535498 - 22535552
Alignment:
Q  369 atcaccaccatcaagtttcctccaagagttacttctgaggctgtatatctcccaa 423  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22535498 atcaacaccatcaagtttcctccaagagttacttctaaggctgtatatctcccaa 22535552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 419
Target Start/End: Complemental strand, 17747904 - 17747866
Alignment:
Q  381 aagtttcctccaagagttacttctgaggctgtatatctc 419  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  17747904 aagtttcctccaagagttacttatgaggctatatatctc 17747866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 344872 - 344828
Alignment:
Q  378 atcaagtttcctccaagagttacttctgaggctgtatatctccca 422  Q
    |||||||||| |||||||||||||| | || ||||||||||||||    
T  344872 atcaagtttcttccaagagttactttttagactgtatatctccca 344828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 44912518 - 44912583
Alignment:
Q  31 ggtccaacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaacccatatgtga 96  Q
    |||||||||||||| |||||||| ||||||||||| |||||| |||||||||||| | ||||||||    
T  44912518 ggtccaacaacaaagagtttagttcacgattccttcacaccaagttcacccaaaatcgatatgtga 44912583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 44918483 - 44918537
Alignment:
Q  31 ggtccaacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaa 85  Q
    |||||||||||||| ||||||||||||||||| ||  ||||| ||||||| ||||    
T  44918483 ggtccaacaacaaagagtttagtccacgattctttcccaccaagttcacctaaaa 44918537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 16920746 - 16920702
Alignment:
Q  378 atcaagtttcctccaagagttacttctgaggctgtatatctccca 422  Q
    |||||||||||||||||| |||||||| || || |||||||||||    
T  16920746 atcaagtttcctccaagaattacttcttagactatatatctccca 16920702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 10228 - 10184
Alignment:
Q  378 atcaagtttcctccaagagttacttctgaggctgtatatctccca 422  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  10228 atcaagtttcctccaagagttacttcttaagctgtatatctccca 10184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 33541 - 33602
Alignment:
Q  24 aggtaaaggtccaacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaa 85  Q
    ||||||||| |||| || ||| ||||||||||| || ||||| |||||| ||||||||||||    
T  33541 aggtaaaggcccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaa 33602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 17472 - 17516
Alignment:
Q  378 atcaagtttcctccaagagttacttctgaggctgtatatctccca 422  Q
    ||||||||| ||||||||||| ||||| ||| |||||||||||||    
T  17472 atcaagttttctccaagagttgcttcttaggttgtatatctccca 17516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 33868 - 33912
Alignment:
Q  378 atcaagtttcctccaagagttacttctgaggctgtatatctccca 422  Q
    ||||||||| ||||||||||| ||||| ||| |||||||||||||    
T  33868 atcaagttttctccaagagttgcttcttaggttgtatatctccca 33912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 27173761 - 27173805
Alignment:
Q  378 atcaagtttcctccaagagttacttctgaggctgtatatctccca 422  Q
    ||||||||||||||||||||||||| | |||||||||||||||||    
T  27173761 atcaagtttcctccaagagttactttttaggctgtatatctccca 27173805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 423
Target Start/End: Complemental strand, 42782974 - 42782928
Alignment:
Q  377 catcaagtttcctccaagagttacttctgaggctgtatatctcccaa 423  Q
    |||||||||||||||||||||||||||| || |||||||||| ||||    
T  42782974 catcaagtttcctccaagagttacttcttagactgtatatcttccaa 42782928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 423
Target Start/End: Complemental strand, 40549029 - 40548983
Alignment:
Q  377 catcaagtttcctccaagagttacttctgaggctgtatatctcccaa 423  Q
    |||||||||||||||| ||||||||||| ||||| || |||||||||    
T  40549029 catcaagtttcctccacgagttacttcttaggctataaatctcccaa 40548983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 423
Target Start/End: Complemental strand, 41227698 - 41227652
Alignment:
Q  377 catcaagtttcctccaagagttacttctgaggctgtatatctcccaa 423  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||||    
T  41227698 catcaagtttcctccaagggttacttcttagactgtatatcttccaa 41227652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 32745205 - 32745250
Alignment:
Q  377 catcaagtttcctccaagagttacttctgaggctgtatatctccca 422  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||    
T  32745205 catcaagtttcctccaggagttacttcttaggctatatatctccca 32745250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 25319622 - 25319667
Alignment:
Q  378 atcaagtttcctccaagagttacttctgaggctgtatatctcccaa 423  Q
    ||||||||| ||||| ||||||||||| ||||| ||||||||||||    
T  25319622 atcaagttttctccatgagttacttcttaggctatatatctcccaa 25319667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 26149315 - 26149360
Alignment:
Q  378 atcaagtttcctccaagagttacttctgaggctgtatatctcccaa 423  Q
    ||||||||| ||||| ||||||||||| ||||| ||||||||||||    
T  26149315 atcaagttttctccatgagttacttcttaggctatatatctcccaa 26149360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 32961072 - 32961117
Alignment:
Q  377 catcaagtttcctccaagagttacttctgaggctgtatatctccca 422  Q
    |||||||||||||||| ||||||||||| | ||| |||||||||||    
T  32961072 catcaagtttcctccacgagttacttcttacgctatatatctccca 32961117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 33789 - 33833
Alignment:
Q  378 atcaagtttcctccaagagttacttctgaggctgtatatctccca 422  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||    
T  33789 atcaagtttcctccacgagttacttcttaggctatatatctccca 33833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 40140 - 40184
Alignment:
Q  378 atcaagtttcctccaagagttacttctgaggctgtatatctccca 422  Q
    ||||||||| ||||| ||||||||||| ||||| |||||||||||    
T  40140 atcaagttttctccacgagttacttcttaggctatatatctccca 40184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 48742297 - 48742341
Alignment:
Q  378 atcaagtttcctccaagagttacttctgaggctgtatatctccca 422  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||    
T  48742297 atcaattttcctccaagagttacttcttagactgtatatctccca 48742341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 9569271 - 9569206
Alignment:
Q  31 ggtccaacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaacccatatgtga 96  Q
    ||||||||||  || ||||| ||||||||||||||||  |||| ||||||||||| | ||||||||    
T  9569271 ggtccaacaaggaagagtttggtccacgattccttaatgccatattcacccaaaatcgatatgtga 9569206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University