View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18064_low_12 (Length: 249)
Name: NF18064_low_12
Description: NF18064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18064_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 43097119 - 43097339
Alignment:
| Q |
12 |
caaagggctgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcagaagactggctctgaacctaccctctcagtttatagaaca |
111 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43097119 |
caaagggttgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcaaaagactggctctgaacctaccctctcagtttatagaaca |
43097218 |
T |
|
| Q |
112 |
cttatgacttgtttgtgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaatgactcaatca |
211 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43097219 |
cttatgacttgtttatgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaacgactcaatca |
43097318 |
T |
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| Q |
212 |
gtactctagaaaaatatttat |
232 |
Q |
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||||||||||||||||||||| |
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| T |
43097319 |
gtactctagaaaaatatttat |
43097339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 6779642 - 6779862
Alignment:
| Q |
12 |
caaagggctgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcagaagactggctctgaacctaccctctcagtttatagaaca |
111 |
Q |
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||||||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6779642 |
caaagggctgttcatggttgatagagaagatgaggcatttaaggtttttcaacgtatgcagaagactggctctgaacctaccctttcagtttatagaaca |
6779741 |
T |
|
| Q |
112 |
cttatgacttgtttgtgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaatgactcaatca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
6779742 |
cttatgacttgtttgtgtagaaagagcaaggtctcacgtgcattcactctttatttggaacatttgaagagccttcctagtcgggacaacgactcaatca |
6779841 |
T |
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| Q |
212 |
gtactctagaaaaatatttat |
232 |
Q |
| |
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||||||||||||||||||||| |
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| T |
6779842 |
gtactctagaaaaatatttat |
6779862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 17487436 - 17487216
Alignment:
| Q |
12 |
caaagggctgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcagaagactggctctgaacctaccctctcagtttatagaaca |
111 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17487436 |
caaagggctgttcatggttgacagagaagatgaggcatttaaggtttttcaacgtatgcagaagactggctctgaacctaccctttcagtttatagaaca |
17487337 |
T |
|
| Q |
112 |
cttatgacttgtttgtgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaatgactcaatca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
17487336 |
cttatgacttgtttgtgtagaaagagcaaggtctcacgtgcattcactctttatttcgaacatttgaagagccttcctagtcgggacaacgactcaatca |
17487237 |
T |
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| Q |
212 |
gtactctagaaaaatatttat |
232 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
17487236 |
gtgctctagaaaaatatttat |
17487216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 22424214 - 22424434
Alignment:
| Q |
12 |
caaagggctgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcagaagactggctctgaacctaccctctcagtttatagaaca |
111 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
22424214 |
caaagggttgttcatggttgatagagaagatgaggcatttaaggtttttcaacgtatgcagaagactagctctgaacctaccctttcagtttatagaaca |
22424313 |
T |
|
| Q |
112 |
cttatgacttgtttgtgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaatgactcaatca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
22424314 |
cttatgacttgtttgtgtagaaagagcaaggtctcatgtgcattcactctttatttggaacatttgaagagccttcctagtcgggacaacgactcaatca |
22424413 |
T |
|
| Q |
212 |
gtactctagaaaaatatttat |
232 |
Q |
| |
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||||||||||||||||||||| |
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| T |
22424414 |
gtactctagaaaaatatttat |
22424434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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