View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18064_low_14 (Length: 249)
Name: NF18064_low_14
Description: NF18064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18064_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43097074 - 43096835
Alignment:
| Q |
1 |
ttgcagttcctcaaaaagattataagcagcattaaattcacgatccaagcaaaaggcattgattagaatgttgtatgaagtgatgtcaagcctaaggtcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43097074 |
ttgcagttcctcaaaaagattataagcagcattaaattcacgatccaagcaaaaggcattgattagaatgttgtatgaaatgatgtcaagcctaaggtcg |
43096975 |
T |
|
| Q |
101 |
ccagcatgatcagtgattaacttgtaagccttcaaaatttgtcccgcctcacacatttccttcacctttttctggagactagcaccatcagaaacctgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43096974 |
ccagcatgatcagtgattaacttgtaagccttcaaaatttgtcccgcctcacacatttccttcacctttttctggagactagcaccatcagaaacttgac |
43096875 |
T |
|
| Q |
201 |
cagaaccctgagaaagattgaagcgaaacgaatattttct |
240 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||| |
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| T |
43096874 |
aagaaccttgagaaagactgaagcgaaacgaatattttct |
43096835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 17487493 - 17487700
Alignment:
| Q |
10 |
ctcaaaaagattataagcagcattaaattcacgatccaagcaaaaggcattgattagaatgttgtatgaagtgatgtcaagcctaaggtcgccagcatga |
109 |
Q |
| |
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|||||||| |||||||||||| |||| ||||||||||| ||||| |||||||| |||||||||||||| | |||||||| || ||| ||||||||| || |
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| T |
17487493 |
ctcaaaaaaattataagcagcgttaacttcacgatccatgcaaagggcattgagtagaatgttgtatgtaatgatgtcaggcttaacctcgccagcaaga |
17487592 |
T |
|
| Q |
110 |
tcagtgattaacttgtaagccttcaaaatttgtcccgcctcacacatttccttcacctttttctggagactagcaccatcagaaacctgaccagaaccct |
209 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| || |||| ||||||||||||||||||||||| |
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| T |
17487593 |
tcagtgattaacttgtaagccctcaaaatttgtcccgcctcacacatttccttcgcctttttcaggagcctggcactatcagaaacctgaccagaaccct |
17487692 |
T |
|
| Q |
210 |
gagaaaga |
217 |
Q |
| |
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|||||||| |
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|
| T |
17487693 |
gagaaaga |
17487700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 6779585 - 6779378
Alignment:
| Q |
10 |
ctcaaaaagattataagcagcattaaattcacgatccaagcaaaaggcattgattagaatgttgtatgaagtgatgtcaagcctaaggtcgccagcatga |
109 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||||||||| ||||| |||||||| |||||||||||||| | |||||||| || ||| ||||||||| || |
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|
| T |
6779585 |
ctcaaaaaaattataagcagcgttaacttcacgatccatgcaaagggcattgagtagaatgttgtatgtaatgatgtcaggcttaacctcgccagcaaga |
6779486 |
T |
|
| Q |
110 |
tcagtgattaacttgtaagccttcaaaatttgtcccgcctcacacatttccttcacctttttctggagactagcaccatcagaaacctgaccagaaccct |
209 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| || |||| ||||||||||||||||||||||| |
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|
| T |
6779485 |
tcagtgattaacttgtaagccctcaaaatttgtcccgcctcacacatttcctttgcctttttcaggagcctggcactatcagaaacctgaccagaaccct |
6779386 |
T |
|
| Q |
210 |
gagaaaga |
217 |
Q |
| |
|
|||||||| |
|
|
| T |
6779385 |
gagaaaga |
6779378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 22424157 - 22423950
Alignment:
| Q |
10 |
ctcaaaaagattataagcagcattaaattcacgatccaagcaaaaggcattgattagaatgttgtatgaagtgatgtcaagcctaaggtcgccagcatga |
109 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||||||||| ||||| |||||||| |||||||||||||| | |||||||| || ||| ||||||||| || |
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| T |
22424157 |
ctcaaaaaaattataagcagcgttaacttcacgatccatgcaaagggcattgagtagaatgttgtatgtaatgatgtcaggcttaacctcgccagcaaga |
22424058 |
T |
|
| Q |
110 |
tcagtgattaacttgtaagccttcaaaatttgtcccgcctcacacatttccttcacctttttctggagactagcaccatcagaaacctgaccagaaccct |
209 |
Q |
| |
|
| || |||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| |||| || |||| ||||||||||||||||||||| | |
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| T |
22424057 |
ttagcgattaacttgtaagccctcaaaatttgtcctgcctcacacatttccttcgcctttttcaggagcctggcactatcagaaacctgaccagaacctt |
22423958 |
T |
|
| Q |
210 |
gagaaaga |
217 |
Q |
| |
|
|||||||| |
|
|
| T |
22423957 |
gagaaaga |
22423950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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