View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18064_low_18 (Length: 211)
Name: NF18064_low_18
Description: NF18064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18064_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 14428017 - 14427837
Alignment:
| Q |
14 |
attatactcttgtcactctattctcgttgcctcactctattattacttcttcactttcttagcagtgagtagtagaaaaaacattaccaccgatgaattt |
113 |
Q |
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| T |
14428017 |
attatactcttggctctttattctttctgcctcaatttattattacttcttcacttgcttagctgtgagtagtaagaaaaacctaaccaccgatgaattt |
14427918 |
T |
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| Q |
114 |
tcacttcttgcattcaaatcatcaattaccttagacccttatcatatgcttagtaattggtcaatttcctcttctgcttct |
194 |
Q |
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| T |
14427917 |
tcacttcttgcattcaaatcctcaattaccttagatccttatcatattcttagtaattggtcaatttccacttctgcttct |
14427837 |
T |
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Target: chr2 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 45 - 194
Target Start/End: Complemental strand, 5084204 - 5084055
Alignment:
| Q |
45 |
tcactctattattacttcttcactttcttagcagtgagtagtagaaaaaacattaccaccgatgaattttcacttcttgcattcaaatcatcaattacct |
144 |
Q |
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| T |
5084204 |
tcactctattattatttcttcacttgcttagctataagtagtaaaaaaaacatcaccacagatgaattttcacttcttgcattcaaatcctcaattacct |
5084105 |
T |
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| Q |
145 |
tagacccttatcatatgcttagtaattggtcaatttcctcttctgcttct |
194 |
Q |
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| T |
5084104 |
tagatccttatcatatgcttagaaattggtcaatttcctcttctacttct |
5084055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 5093840 - 5094013
Alignment:
| Q |
19 |
actcttgtcactctattctcgttgcctcactctattattacttcttcactttcttagcagtgagtagtagaaaaaacattaccaccgatgaattttcact |
118 |
Q |
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| T |
5093840 |
actcttggctctgtattctctctgcttcactctattattacttcttcacttg-ttagttgtgagtagtaaaaaaaacataaa-accgatgaattttcact |
5093937 |
T |
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| Q |
119 |
tcttgcattcaaatcatcaattaccttagacccttatcatatgcttagtaattggtcaatttcctcttctgcttct |
194 |
Q |
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||||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |
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| T |
5093938 |
tcttgcattcaaatcctcaataaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttct |
5094013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 5110857 - 5111016
Alignment:
| Q |
32 |
tattctcgttgcctcactctattattacttcttcactttcttagcagtgagtagtagaaaaaacattaccaccgatgaattttcacttcttgcattcaaa |
131 |
Q |
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||||||| ||||||||||||||||||| ||||||||| |||||| ||| | || ||| ||| ||||| ||||||||| ||||||||||||||||| |
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| T |
5110857 |
tattctctctgcctcactctattattacctcttcacttgcttagctatgatttcta---aaaccatcaccacagatgaatttgcacttcttgcattcaaa |
5110953 |
T |
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| Q |
132 |
tcatcaattaccttagacccttatcatatgcttagtaattggtcaatttcctcttctgcttct |
194 |
Q |
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|| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |
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| T |
5110954 |
tcctcaattaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttct |
5111016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 16872283 - 16872462
Alignment:
| Q |
18 |
tactcttgtcactctattctcgttgcctcactctattattacttcttcactttcttagcagtgagtagtagaaaaaacattaccaccgatgaattttcac |
117 |
Q |
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|||||||||| || | ||||| || |||||| |||||||||||||||||| |||||| |||||| || |||||||| |||| ||||||||||||| |
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| T |
16872283 |
tactcttgtctctatgttctctatgtctcactgcattattacttcttcacttgcttagctatgagtactaacaaaaacatcaccatagatgaattttcac |
16872382 |
T |
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| Q |
118 |
ttcttgcattcaaatcatcaattaccttagacccttatcatatgcttag---taattggtcaatttcctcttctgcttct |
194 |
Q |
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|||||||||||||||| || |||||||||||||||||||| | |||||| |||||||||||| ||||||||| ||||| |
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| T |
16872383 |
ttcttgcattcaaatcctctattaccttagacccttatcacaagcttagtaataattggtcaatctcctcttctacttct |
16872462 |
T |
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