View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18064_low_3 (Length: 435)
Name: NF18064_low_3
Description: NF18064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18064_low_3 |
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| [»] scaffold0939 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 35386014 - 35386445
Alignment:
| Q |
1 |
gatcccaatccttatgcccttgagccattaatgtatcatgtagttccataaaatcatccatgacaaagtcacttgtattccttggaagactttgtaactc |
100 |
Q |
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|||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
35386014 |
gatcccaatccttaagcccttgagccagtaatgtatcattaagttccataaaatcatccatgacaaagtcactagtattccatggaagactttgtaactc |
35386113 |
T |
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| Q |
101 |
aaggtccaaattagtctccactaacacacccnnnnnnnnnnnnnnnnnn---gaattttcttcaatgcatttaggagctgtagattgtgtaggatcaatc |
197 |
Q |
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| T |
35386114 |
aaggtccaaattagtctccactaacacacccttattattattattattattagaattttcttcaatgcatttaggagctgtagattgtgtaggatcaatc |
35386213 |
T |
|
| Q |
198 |
cctatacttgttgttgtagaggattgtaatggtgccaaattgagcctagcagattcgccatataacctttttgaagcattgtcataggcaagtgctgctt |
297 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35386214 |
cctatacttgttgttgtagaggattgtgatggtgccaaattgagcctagcagattcgccatataacctttttgaagcattgtcataggcaagtgctgctt |
35386313 |
T |
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| Q |
298 |
caatagaggtgttgaatgttcctagccaaagcctagtg-ccacgtttgggttctcttatttcagcaacccattttccccaagtcctttgcctaactcctt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35386314 |
caatagaggtgttgaatgttcctagccaaagcctagtgcccacgtttgggttctcttatttcagcaacccattttccccaagtcctttgcctaactcctt |
35386413 |
T |
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| Q |
397 |
tgtaattgcataatgcattctctgctcctcct |
428 |
Q |
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| T |
35386414 |
tgtaattgcataatgcattctctggtcctcct |
35386445 |
T |
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Target: scaffold0939 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0939
Description:
Target: scaffold0939; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 2547 - 2498
Alignment:
| Q |
354 |
atttcagcaacccattttccccaagtcctttgcctaactcctttgtaatt |
403 |
Q |
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| T |
2547 |
atttcagcaacccattttccccaagtcctttgcctaacacctctgtaatt |
2498 |
T |
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