View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18064_low_7 (Length: 342)
Name: NF18064_low_7
Description: NF18064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18064_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 327
Target Start/End: Original strand, 39676446 - 39676769
Alignment:
| Q |
13 |
aatatcaaatctaaacaataagaaaaacaccaaaaactgcaatgatgttaaataaatgctaatctggtagctgaagcgttaatagaaatgtgtcaccatg |
112 |
Q |
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| T |
39676446 |
aatatcaaatctaaacaataagaaaaacaccaaaaactgcaatgatgttaaataagtgctcatctggtagctgaagcgttaatagaaatgtgtcaccatg |
39676545 |
T |
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| Q |
113 |
tcataccaaaccgcagcgatactggacgtgctcactccggcaattgaaactcaaactcaaatgtgcaacttcaaat------------ttagttaggcca |
200 |
Q |
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| T |
39676546 |
tcataccaaaccgcagcgatactggacgtgctcactccggcaattgaaactcaaactcaaaggtgcaacttcaaataaaaaaaaggtgttagttaggcca |
39676645 |
T |
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| Q |
201 |
atgccgtaaactaaaagcttatccggaagtagtgtcgcaactttaaaacaaatttaaataatatagagccagcactcactttggaggctgaaactctaaa |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39676646 |
atgccgtaaactaaaagcttatccgga---agtgtcgcaactttaaaacaaatttaaacaatatagagccagcactcactttggaggctgaaactctaaa |
39676742 |
T |
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| Q |
301 |
cggaaaggatcatgcggaaaaacttca |
327 |
Q |
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| T |
39676743 |
cggaaaggatcatgcggcaaaacttca |
39676769 |
T |
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