View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18064_low_8 (Length: 342)
Name: NF18064_low_8
Description: NF18064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18064_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 40695789 - 40696100
Alignment:
| Q |
14 |
tgttaaaatgtgattgttactgtaatatacgatcgcaccacgattgcaatctgatacggttggagaaaccgcaatattgcagccgcatcgatgtcatcaa |
113 |
Q |
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| T |
40695789 |
tgttaaaatgtgatttttactgtaatttacaatcgcaccacaattgcaatctgatacggttggagaaaccgcaatattgcagccgcatcgatgtcatcaa |
40695888 |
T |
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| Q |
114 |
cactttgaaacaatgctctatgcaactcttttgaaatttccatcttcttttgttctacactagagggaaggagatgattcaaatgcaaaatatagacaac |
213 |
Q |
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| T |
40695889 |
ca----------atgctctatccaactcttttgaaatttccatcttcttttgttctacactagagggaaggagatgattcaaatgcaaaatatagacaac |
40695978 |
T |
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| Q |
214 |
tgaatgacctaaaatctcgaatattaatttccctctc---------tttattcctcctagattggataagatgacatttccatttatataataattaaga |
304 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40695979 |
tgaatgacctaaaatctcaaatattaatttccctctctttataagttttattcctcctagattggataagatgacatttccatttatataataattaaga |
40696078 |
T |
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| Q |
305 |
aaatgaaaaaagacaccattatt |
327 |
Q |
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||||| ||||||||||||||||| |
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| T |
40696079 |
aaatg-aaaaagacaccattatt |
40696100 |
T |
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