View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18064_low_9 (Length: 317)
Name: NF18064_low_9
Description: NF18064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18064_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 853660 - 853361
Alignment:
| Q |
1 |
gacaagtgatacagcaactttggagatggatgatgagggtaagctaggaacaattctgataacaaacgatgatggtattgatgctcctggtttgagagct |
100 |
Q |
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| T |
853660 |
gacaagtgatacagcaactttggagatggatgatgagggtaagctaggaacaattctgataacaaacgatgatggtattgatgctcctggtttgagagct |
853561 |
T |
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| Q |
101 |
ttggttgaatccctggttaacaccaatctttttaatgtcttggtctgtgtgctcctgataggtaagtaaatcaggttccgtcatgatcgaattcatatag |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
853560 |
ttggttgaatccctcgttaacaccaatctttttaatgtcttggtc--tgtgctcctgataggtaagtaaatcaggttccgtcatgatcaaattcatatag |
853463 |
T |
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| Q |
201 |
tcaaactcatctataaatgtttgattgagattaaattttttaaaattttaaactctatatgatctcggtccaacggtcattgatgtggctgagtgtatga |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
853462 |
tcaaacacatctataaatgtttgattgagattaaatttttttaaattttaaactctatatgatctcggtccaacggtcattgatgtggctaagtgtatga |
853363 |
T |
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