View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_high_11 (Length: 438)
Name: NF18065_high_11
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 52964603 - 52964189
Alignment:
| Q |
17 |
aaacttgatgcacttaattaattaagatctgttaaaagtccaatataagaggaaagtgagcaaatatgagacaagatgtcccgctagcaacaccataaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
52964603 |
aaacttgatgcacttaattaattaagatctgttaaaagtccaatataagaggaaagtgagcaaatatgagacaggaagtcccgctagcaacaccataaat |
52964504 |
T |
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| Q |
117 |
gcatgccggcaggccatcctggctcaaatctactctctctaccttcataacagacactttcagagtgaaaatgcaattcaacttcaaccatacttgcatt |
216 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52964503 |
gcatgctggcaggccatcctggctcaaatctactttctctaccttcataacagacactttcagagtgaaaatgcaattcaacttcaaccatactttcatt |
52964404 |
T |
|
| Q |
217 |
tcatctttcatcactagatagcatgatgtattatatattttgggcaccatattgttgccaatttataataaaacagagatggatcgtgaatggttggaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52964403 |
tcatctttcatcactagatagcatgatgtattatatattttgggcaccatattgttgccaatttataataaaacagagatggatcgtgaatggttggaat |
52964304 |
T |
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| Q |
317 |
ccttaacttttgacacgtgttcaaatatgattgagtgattaattccctgaaatattgttatcaaacagatgcacattgaccccacgtgctatgaaccttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |
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| T |
52964303 |
ccttaacttttgacacgtgttcaaatatgattgagtgattaattccctgaaatattgttagcaaacagatacacattgaccccacgtgctatgaactttt |
52964204 |
T |
|
| Q |
417 |
tcctatgctactcct |
431 |
Q |
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||| ||||| ||||| |
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| T |
52964203 |
tcccatgctgctcct |
52964189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 52969707 - 52969511
Alignment:
| Q |
35 |
taattaagatctgttaaaagtccaatataagaggaaagtgagcaaatatgagacaagatgtcccgctagcaacaccataaa-tgcatgccggcaggccat |
133 |
Q |
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|||||||||| |||||| |||| ||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||| |||||||||||| ||||| |
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| T |
52969707 |
taattaagatatgttaagagtctaatataagaggaaagatagcaaatgtgagacaagatggcccgctagcaacaccctaaaatgcatgccggcaagccat |
52969608 |
T |
|
| Q |
134 |
cctggctcaaatctactctctctaccttcataacagacactttcagagtga---------aaatgcaattcaacttcaaccatacttgcatttcatc |
221 |
Q |
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| T |
52969607 |
cctggctcaaatccactctctctaccttcatatcagacactttcagagtgaataacctacaaatgcaattcaacttcaaccacacttgcatttcatc |
52969511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 53911810 - 53911745
Alignment:
| Q |
222 |
tttcatcactagatagcatgatgtat----tatatattttgggcaccatattgttgccaatttata |
283 |
Q |
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|||||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||||||||| |
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| T |
53911810 |
tttcatcactggatagcatgatgtatgtattatatattttgagcatcatattgttgccaatttata |
53911745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 16053178 - 16053137
Alignment:
| Q |
119 |
atgccggcaggccatcctggctcaaatctactctctctacct |
160 |
Q |
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||||||||| | ||||||||||||||| |||||||||||||| |
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| T |
16053178 |
atgccggcaagtcatcctggctcaaatatactctctctacct |
16053137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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