View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18065_high_13 (Length: 383)
Name: NF18065_high_13
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 34555905 - 34556274
Alignment:
| Q |
1 |
ctgtgattgtcctgatcatgctagtccttggaagtttgtttctcaagtttcaactactttttagtcctctcttgttgagtgttagtgatagttctcaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
34555905 |
ctgtgattgtcctgatcatgctagtccttggaagtttgtttctcaagtttcaactactttttagtcttctcttgttgagtgttagttatagttctcaaat |
34556004 |
T |
|
| Q |
101 |
tagattctgggagagtattcaggaacttttctctttt-catggtttttcctatacttcttttacagtcaactttacaccatttctgtctagttcctttca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34556005 |
tagattctgggagagtattcaggaacttttctctttttcatggcttttcctatacttcttttacagtcaactttacaccatttctgtctagttcctttca |
34556104 |
T |
|
| Q |
200 |
aattttgaccttttcaataaccttcataatcatgaaaggttggtgagtttaagtctcttatgcttttacttcatctttcttcaaatcctggaaaagaaat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34556105 |
aattttgaccttttcaataaccttcataatcatgaaaggttggtgagtttaagtctcttatgcttttacttcatctttcttcaaatcctggaaaagaaat |
34556204 |
T |
|
| Q |
300 |
ttggtcatttgacaccttgggtttcttcttttctaagtcttattttccatagtgtgcctaaaatattctt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34556205 |
ttggtcatttgacaccttgggtttcttcttttctaagtcttattttccatagtgtgcctaaaatattctt |
34556274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University