View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18065_high_15 (Length: 363)
Name: NF18065_high_15
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_high_15 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 2586421 - 2586686
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2586421 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
2586520 |
T |
|
| Q |
114 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
2586521 |
catcaaggagaatatactttttggaagagaggatgctacatttgaagatgttgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttg |
2586620 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggttagtgttgattgcttttgtcaatatgctataaaccaaatatga |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2586621 |
ccacaaggatatgatactcaggttagtgttgattgcttttgtaaatatgctataaaccaaatatga |
2586686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 2620111 - 2620351
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2620111 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2620210 |
T |
|
| Q |
114 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
2620211 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttg |
2620310 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggttagtgttgattgcttttg |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2620311 |
ccacaaggatatgatactcaggttagtgttgattgcttttg |
2620351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 2432836 - 2433079
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2432836 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2432935 |
T |
|
| Q |
114 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2432936 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgccaaagcttccaatgctcataatttcatatcaatgttg |
2433035 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggttagtgttgattgcttttgtca |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
2433036 |
ccacaaggatatgatactcaggttagtgttaattacttttgtca |
2433079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 2677473 - 2677230
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2677473 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2677374 |
T |
|
| Q |
114 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
2677373 |
cattatggagaatatactttttggaagagaggatgctacatatgaagaaatcgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttg |
2677274 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggttagtgttgattgcttttgtca |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
2677273 |
ccacaaggatatgatactcaggttagtgttaattacttttgtca |
2677230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 2572637 - 2572410
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2572637 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
2572538 |
T |
|
| Q |
114 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
2572537 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttg |
2572438 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggttagtg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
2572437 |
ccacaaggatatgatactcaggttagtg |
2572410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 2448703 - 2448930
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2448703 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2448802 |
T |
|
| Q |
114 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
2448803 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtggatgctgctaaagcttccaatgctcataatttcatttcattgttg |
2448902 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggttagtg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
2448903 |
ccacaaggatatgatactcaggttagtg |
2448930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 2600215 - 2599989
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2600215 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2600116 |
T |
|
| Q |
114 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| |||| ||||||||||||||||| ||| ||||| |
|
|
| T |
2600115 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtgaatgctgctaaaacttctaatgctcataatttcatttcattgttg |
2600016 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggttagt |
240 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
2600015 |
ccacaagtatatgatactcaggttagt |
2599989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 2645035 - 2644808
Alignment:
| Q |
14 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
113 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2645035 |
agattcttcttgatggagttgccattcataagttgcaacttcagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2644936 |
T |
|
| Q |
114 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
2644935 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtagatgctgctaaagtttccaatgctcataatttcatttcattgttg |
2644836 |
T |
|
| Q |
214 |
ccacaaggatatgatactcaggttagtg |
241 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
2644835 |
ccacaaggatatgatacgcaggttagtg |
2644808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 2677191 - 2677094
Alignment:
| Q |
221 |
gatatgatactcaggttagtgttgattgcttttgtca---atatgctataaaccaaatatgagtaatt-agtggaattttcctaagatataatactca |
314 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
2677191 |
gatatgatacttgggttagtgctaattgcttttgtcattaatatgctattaaccaaatatgagtaattaagtggaattttccttagatatgatactca |
2677094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 2588400 - 2588452
Alignment:
| Q |
268 |
aaccaaatatgagtaattagtggaattttcctaagatataatactcaggttag |
320 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
2588400 |
aaccaaatatgagtaattactggaattttcctaggatatgatactcatgttag |
2588452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 320
Target Start/End: Original strand, 2433123 - 2433227
Alignment:
| Q |
219 |
aggatatgatactcaggttagtgttgattgcttttgtca---atatgctataaaccaaatatgagtaatta-gtggaattttcctaagatataatactca |
314 |
Q |
| |
|
||||| ||||||| |||||||| | ||||||||||||| ||||||||| ||||||||||||||| ||| |||||| ||||||| ||||| ||||| | |
|
|
| T |
2433123 |
aggatttgatacttgggttagtgctaattgcttttgtcattaatatgctattaaccaaatatgagtagttatgtggaa-tttcctaggatatgatactta |
2433221 |
T |
|
| Q |
315 |
ggttag |
320 |
Q |
| |
|
|||||| |
|
|
| T |
2433222 |
ggttag |
2433227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 2433043 - 2433080
Alignment:
| Q |
302 |
gatataatactcaggttagtgttaattacttttgtcac |
339 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2433043 |
gatatgatactcaggttagtgttaattacttttgtcac |
2433080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 2677266 - 2677229
Alignment:
| Q |
302 |
gatataatactcaggttagtgttaattacttttgtcac |
339 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2677266 |
gatatgatactcaggttagtgttaattacttttgtcac |
2677229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 17872804 - 17872673
Alignment:
| Q |
21 |
tcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaag |
120 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||| |||| ||||||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
17872804 |
tcttgatggagtagctattcgtaacttgcagattaaatggcttaggtcaatgatggggttggttagtcaagaacctgctttatttgcaacaagcattaaa |
17872705 |
T |
|
| Q |
121 |
gagaatatactttttggaagagaggatgctac |
152 |
Q |
| |
|
||||||||| ||||||| | ||| |||||||| |
|
|
| T |
17872704 |
gagaatataatttttggtaaagaagatgctac |
17872673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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