View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_high_21 (Length: 337)
Name: NF18065_high_21
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 76 - 241
Target Start/End: Complemental strand, 26112841 - 26112677
Alignment:
| Q |
76 |
gttcaaattgcttgtttaccatgtgaattaatgtgtg--ggaaataaacagtcgtatgacccaatattatatcccttcttatactgataactgtaattca |
173 |
Q |
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| T |
26112841 |
gttcaaattgcttgtttaccacgtgaattaatgtgtgtgggaaataaatagttgtatgacccaatattctatccctt---atactgataactgaaattca |
26112745 |
T |
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| Q |
174 |
ttagaaattccgtattaattaggcgtgagcatataccattccccaataaaacaaaaataataattcca |
241 |
Q |
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| T |
26112744 |
ttggaaattcccaattaattaggcgtgagcatataccattttccaattaaacaaaaataataattcca |
26112677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 26112646 - 26112594
Alignment:
| Q |
272 |
ccagcatttgaagctcaaccgtttgtatatattacttccaacaaaatagggaa |
324 |
Q |
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| T |
26112646 |
ccagcatttgaagctcaaccgtttgtatatatcacttccaacaaaatagggaa |
26112594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 26112957 - 26112903
Alignment:
| Q |
9 |
atacattcatataagaataatgacatattatgaaacgtcaaagaatgtccataaa |
63 |
Q |
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| T |
26112957 |
atacattcatataagaacaatggcatattatgaaacgtcaaaggatgtccataaa |
26112903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 73 - 241
Target Start/End: Original strand, 12092855 - 12093022
Alignment:
| Q |
73 |
accgttcaaattgcttgtttaccatgtgaattaatgtgtg--ggaaataaacagtcgtatgacccaatattatatcccttcttatactgataactgtaat |
170 |
Q |
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| T |
12092855 |
accgttcaaattacttgtttaccacgtgaattaatgtgtgtgggaaataaatagttgtatgacccaatattctatccctt---atactgatagctgaaat |
12092951 |
T |
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| Q |
171 |
tcattagaaattccgtattaattaggcgtgagcatataccattccccaataaaacaaaaataataattcca |
241 |
Q |
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| T |
12092952 |
tcattggaaattcccaattaattaggcgtgagcatataccattttccaattaaacaaaaataataattcca |
12093022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 12093051 - 12093103
Alignment:
| Q |
272 |
ccagcatttgaagctcaaccgtttgtatatattacttccaacaaaatagggaa |
324 |
Q |
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| T |
12093051 |
ccagcatttgaagctcaaccgtttgtatatatcacttccaacaaaatagggaa |
12093103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 12092735 - 12092796
Alignment:
| Q |
2 |
atgactgatacattcatataagaataatgacatattatgaaacgtcaaagaatgtccataaa |
63 |
Q |
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| T |
12092735 |
atgactgatacattcatataagaccaatggcctattatgaaacgtcaaaggatgtccataaa |
12092796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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