View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_high_22 (Length: 335)
Name: NF18065_high_22
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 31352265 - 31352567
Alignment:
| Q |
13 |
aaaattcataagtgtgtcccacatagcctttgagctatatgcatcaacagttgtctcgaacaccttgttatctacacattgatgaatatataataaggtc |
112 |
Q |
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| T |
31352265 |
aaaattcataagtgtgtcccacatagcctttgagctatatgcatcaacagttttctcgaacaccttgttatctacacattgatgaatatataataaggtc |
31352364 |
T |
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| Q |
113 |
ttgcagtctttcttatttgcatctttatgcgaatttcttagagcttttgtcaggtttacagggagcgcttcaacagtggacaacttcaagaacctcttgc |
212 |
Q |
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| T |
31352365 |
ttgaagtctttcttatttgcatctttatgcgaatttcttagagcttttgtcagctttacagggagcgcttcaacagtggacaacttcaagaacctcttgc |
31352464 |
T |
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| Q |
213 |
aagccgaagatctcgccttcnnnnnnnnnnnnnnatccatctatcccagttctaaagaacttgttgatttgctcagaaattactgttaccactcatggtt |
312 |
Q |
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| T |
31352465 |
aagccgaagatctcgccttc---tttttttttttatccatctatcccagttctaaagaacttgttgatttgctcagaaattactgttaccactcatggtt |
31352561 |
T |
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| Q |
313 |
gatttg |
318 |
Q |
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|||||| |
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| T |
31352562 |
gatttg |
31352567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 310
Target Start/End: Original strand, 31352559 - 31352594
Alignment:
| Q |
275 |
gttgatttgctcagaaattactgttaccactcatgg |
310 |
Q |
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| T |
31352559 |
gttgatttgctcagaaattactattaccactcatgg |
31352594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 46339127 - 46339237
Alignment:
| Q |
39 |
cctttgagctatatgcatcaacagttgtctcgaacaccttgttatctacacattgatgaatatataataaggtcttgcagtctttcttatttgcatcttt |
138 |
Q |
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||||||||||||||||||||||| || | | |||||||||||| ||||||||||||||||| || |||||| ||||| ||| || ||||||||| |
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| T |
46339127 |
cctttgagctatatgcatcaacaatttttt-gaacaccttgttctctacacattgatgaatgtaggataaggctttgcaatctccattccctgcatcttt |
46339225 |
T |
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| Q |
139 |
atgcgaatttct |
150 |
Q |
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|||||||||||| |
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| T |
46339226 |
atgcgaatttct |
46339237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 46339284 - 46339316
Alignment:
| Q |
192 |
acaacttcaagaacctcttgcaagccgaagatc |
224 |
Q |
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| T |
46339284 |
acaacttcaagaacctcttgcaagccaaagatc |
46339316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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