View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_high_26 (Length: 309)
Name: NF18065_high_26
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 24 - 294
Target Start/End: Original strand, 30769655 - 30769925
Alignment:
| Q |
24 |
gatcacgcgttaatgaaacaatgaacgacgattccttccctaatgtccccggaggcaagcttcggctcatgtgcagctacggaggccacataatgccgcg |
123 |
Q |
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| T |
30769655 |
gatcacgcgttaatgaaacaatgaacgacgattccttccctaatgtccccggaggcaagcttcggctaatgtgcagctacggaggccacataatgccgcg |
30769754 |
T |
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| Q |
124 |
ccctcacgataagtctttatgttatgtaggcggtgacaccagaatcgtggtcgtggatcgcagttcttctctgagagacctatgttcacgcctttcgaga |
223 |
Q |
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|||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
30769755 |
ccctcatgataagtctctatgttatgtaggtggtgacaccagaatcgtggtcgtggatcgcagttcttctctgagagacctatgttcgcgtctttcgaga |
30769854 |
T |
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| Q |
224 |
acaattctcaatggaagaccctttactctcaagtaccagcttcctaatgaagaccttgataacctcattac |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30769855 |
acaattctcaatggaagaccctttactctcaagtaccagcttccaaatgaagaccttgataacctcattac |
30769925 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 44884434 - 44884375
Alignment:
| Q |
237 |
gaagaccctttactctcaagtaccagcttcctaatgaagaccttgataacctcattactg |
296 |
Q |
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||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| |||| |
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| T |
44884434 |
gaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcatcactg |
44884375 |
T |
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