View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_high_31 (Length: 283)
Name: NF18065_high_31
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 27430777 - 27430526
Alignment:
| Q |
13 |
ttgtttcatattcctacttggttttgagnnnnnnnggtacaattagaaaacttatccaattatgtaattatttttcagaaaagtttcacaaacatgggag |
112 |
Q |
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| T |
27430777 |
ttgtttcatagtcctacttggttttgagtttttttggtacaattagaaaacttatccaattatgtaattatttttcagaaaagtttcacaaacatgggag |
27430678 |
T |
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| Q |
113 |
aaggagtctgatcgtcctgtggaagatggtcatcaatggagaaagtatgggcnnnnnnngatcttgcacaccgattttccaaggnnnnnnnnnnnnnnnt |
212 |
Q |
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| T |
27430677 |
aaggagtctgatcgtcctgtggaagatggtcatcaatggagaaagtatgggcaaaaaaagatcttgcacaccgattttccaagg------tatatatatt |
27430584 |
T |
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| Q |
213 |
tttacgagtttaattaagcactaacttcactatttgaacacattatcatgttaattat |
270 |
Q |
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| T |
27430583 |
tttacgagtttaattaagcacaaacttcactatttgaacaaattatcatgttaattat |
27430526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 27448668 - 27448560
Alignment:
| Q |
88 |
cagaaaagtttcacaaacatgggagaaggagtctgatcgtcctgtggaagatggtcatcaatggagaaagtatgggcnnnnnnngatcttgcacaccgat |
187 |
Q |
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||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||| | |||||||||||||||| |
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| T |
27448668 |
cagaaaaatttcacaaacatgggagaaggagtctgaacagcctgaagaagatggtcatcagtggagaaagtatggccaaaaaaagatcttgcacaccgat |
27448569 |
T |
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| Q |
188 |
tttccaagg |
196 |
Q |
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| T |
27448568 |
tttccaagg |
27448560 |
T |
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