View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_high_34 (Length: 255)
Name: NF18065_high_34
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 35537858 - 35537621
Alignment:
| Q |
1 |
acttagttgagttgagcatcacttgtgattcatctcgaccattcattccaatccaatggttgatagtgacgatccacgatgaagcattagggtagcggtt |
100 |
Q |
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| T |
35537858 |
acttagttgagttgagcatcatttgtgattcatcttgaccattcattccaatccaatggttgatagtgacgatccacgatgaagcattagggtagcggtt |
35537759 |
T |
|
| Q |
101 |
caccattacatacacacccttgcaatttcccgccaaaacagaggcattgtctttttcctttgcttctcgcttccactctcatcgtcgaacggaatatttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35537758 |
caccattacatacacacccttgcaatttcccgccaaaacagaggcattgtctttttcctttgcttctcgcttccactctcatcgtcgaacggaatatctg |
35537659 |
T |
|
| Q |
201 |
taaat-tgtaatcatcggtggcggagaaccggtggcac |
237 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
35537658 |
taaatctgtaatcatcggtggcggagaaccggtggcac |
35537621 |
T |
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