View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_12 (Length: 416)
Name: NF18065_low_12
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 61 - 398
Target Start/End: Original strand, 41424666 - 41425008
Alignment:
| Q |
61 |
ctattttaaaaaattaataaaatgagaaacta-tttgataataacttataaagatagagaccatattggtatttactcg----tnnnnnnnntgtttttg |
155 |
Q |
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| T |
41424666 |
ctattttaaaaaattaataaaatgagaaactaatttgataataacttataaagatagagtccatattggtatttactcgatcgtaaaaaaaatgttcttg |
41424765 |
T |
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| Q |
156 |
gacaaccttttgtcctcatatcttttctatattagggtgatgcccttcatgagacggatttgtacaaccctacaccagaccaacccatagattttcatgg |
255 |
Q |
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| T |
41424766 |
gacaaccttttgtcctcatatcttttctatattagggtgatgcccttcatgagacggatttgtacaaccctacaccagaccaacccatagattttcatgg |
41424865 |
T |
|
| Q |
256 |
gacgtattcatttatttctgtctacaaaggtgggtcacagtttcaatttttgacacgtagtattaattgagagtggaattgttggaagaagaagagtgtg |
355 |
Q |
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| T |
41424866 |
gacgtattcatttatttctgtctacaaaggtgggtcacagtttcaatttttgacacgtagtattaattgagagtggaattgttggaagaagaagagtgtg |
41424965 |
T |
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| Q |
356 |
actttgtggtgtgagcattaaatgaaaacacaagtggcattat |
398 |
Q |
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| T |
41424966 |
actttgtgctgtgagcattaaatgaaaacacaagtggcattat |
41425008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 41008916 - 41008964
Alignment:
| Q |
31 |
taattgaaaaacttttaacaaatatagaggctattttaaaaaattaata |
79 |
Q |
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| T |
41008916 |
taattgagaaacttttaacaaagatagagactattttaaaatattaata |
41008964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 21248991 - 21249061
Alignment:
| Q |
32 |
aattgaaaaacttttaacaaatatagaggctattttaaaaaattaataaaatgagaaact-atttgataat |
101 |
Q |
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| T |
21248991 |
aattgaaaaacttttgacaaagatggagactaatttaaaatattaataaagttagaaactaatttgataat |
21249061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 33676673 - 33676713
Alignment:
| Q |
31 |
taattgaaaaacttttaacaaatatagaggctattttaaaa |
71 |
Q |
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| T |
33676673 |
taattgagaaacttttaacaaaaatagagactattttaaaa |
33676713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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