View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18065_low_14 (Length: 368)
Name: NF18065_low_14
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 6723256 - 6722906
Alignment:
| Q |
1 |
accaacctataagcgtgatccattttgatagctctaacaaataaaaaaggtgatcataaattaacaattgtaatggtacgagcatcaatgacttgatcca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
6723256 |
accaacctataagcctgatccattttgatagctctaacaaataaaaaaggtgatcataaattaacaattgtaatggtacgagcatcaaggactcgatcca |
6723157 |
T |
|
| Q |
101 |
attatcatctatgttccaacaatgaatttcactg-aaaaaataatgatcaaacttgataaagggaacaaaatcacgttagtttgtgttgaccactttgcc |
199 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6723156 |
attatcatttatgttccaacaatgaatttcactggaaaaaataatgatcaaacttgataaagggaacaaaatcacgttagtttgtgttgaccactttgcc |
6723057 |
T |
|
| Q |
200 |
tcaaagcatggtgcagcacatgattgtagatcctgcaccatctcaagaaacatcacgcctcataccgatatgcaaatcatgatttacacctcttgcattg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6723056 |
tcaaagcatggtgcagcacatgattgtagatcctccaacatctcaagaaacatcacgcctcataccgatatgcaaaccatgatttacacctcttgcattg |
6722957 |
T |
|
| Q |
300 |
tcttcaagaatcatctcgttcaatgt-aggaaaacattgagtaccaacatg |
349 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6722956 |
tcgtcaagaatcatctcgttcaatgtcaggaaaacattgagtaccaacatg |
6722906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University