View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_17 (Length: 349)
Name: NF18065_low_17
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 64 - 332
Target Start/End: Original strand, 6705277 - 6705545
Alignment:
| Q |
64 |
tcacttacttgattctaagatagttcttaggtatttgtggcaagaatggttctttcaatctgcattatatttttgaaaatccaagtgaatattcatcaca |
163 |
Q |
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| T |
6705277 |
tcacttacttaattctaagatagttcttaggtatttgtggcaagaatggttctttcaatctgcattatattattgaaaatccaagtgaatattcatcaca |
6705376 |
T |
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| Q |
164 |
aaaactaattaaattgcactagcttaaaatagttgacatgaatcatatataaataaatgttatatataagtgtnnnnnnnttaatgttagcttactgatt |
263 |
Q |
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| T |
6705377 |
aaaactaattaaattgcactagcttaaaatagttgacatgaatcatatataaatatatgttatatataagggtaaaaaaattaatgttagcttactgatt |
6705476 |
T |
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| Q |
264 |
ttgtgaggcttgtagcataaaccaaattccagaatgaggtctacgaggaggatcgacaactcgaaaagc |
332 |
Q |
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| T |
6705477 |
ttgtgaggcttgtagcataaaccaaattccagaatgaggtctacgaggaggatcgacaactcgaaaagc |
6705545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 6705227 - 6705260
Alignment:
| Q |
13 |
gtagagaagaacaatctaatctatttaggaaatt |
46 |
Q |
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| T |
6705227 |
gtagagaagaacaatctaatctatttaggaaatt |
6705260 |
T |
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