View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18065_low_19 (Length: 341)

Name: NF18065_low_19
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18065_low_19
NF18065_low_19
[»] chr4 (1 HSPs)
chr4 (119-257)||(45100670-45100805)
[»] chr1 (2 HSPs)
chr1 (119-257)||(12228850-12228985)
chr1 (171-257)||(35166998-35167083)
[»] chr8 (3 HSPs)
chr8 (11-119)||(11079659-11079767)
chr8 (11-104)||(1652868-1652961)
chr8 (11-104)||(1741244-1741337)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 45100805 - 45100670
Alignment:
Q  119 atatatacacgaaccattaattaccaccatcttaatcaaggaatacataaagaaatttaccacccatcttacatattcgaatattgcaataatcaaattg 218  Q
    |||||||||| |||||||||||||||||||||||||  |  ||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45100805 atatatacacaaaccattaattaccaccatcttaattcaaaaa---ataaataaatttaccacccatcttacatattcgaatattgcaataatcaaattg 45100709  T
Q  219 aattgaatgaaatttaaactactttgagtctaaatgctc 257  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45100708 aattgaatgaaatttaaactactttgagtctaaatgctc 45100670  T

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Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 12228985 - 12228850
Alignment:
Q  119 atatatacacgaaccattaattaccaccatcttaatcaaggaatacataaagaaatttaccacccatcttacatattcgaatattgcaataatcaaattg 218  Q
    ||||||||||||||||||||||||||||||||||||  |  ||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  12228985 atatatacacgaaccattaattaccaccatcttaattcaaaaa---ataaataaatttaccacccatcttacatattcgaatattgcaataatcaaatta 12228889  T
Q  219 aattgaatgaaatttaaactactttgagtctaaatgctc 257  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  12228888 aattgaataaaatttaaactactttgagtctaaatgctc 12228850  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 35166998 - 35167083
Alignment:
Q  171 aaatttaccacccatcttacatattcgaatattgcaataatcaaattgaattgaatgaaatttaaactactttgagtctaaatgctc 257  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||||| ||||||||    
T  35166998 aaatttaccacccatcttacatatttgaatattgcaataatcaaattaaattgaataaaatttaaacta-tttgagtcgaaatgctc 35167083  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 11079767 - 11079659
Alignment:
Q  11 agaatatgcaacggcctcatttctggtataagcaaccgatgatggaaacgtcacccatttaggtggcgatgttaaactctctggcgagaagcgagctttc 110  Q
    |||| ||||||  |||||||||||||||||||||||||||||||    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11079767 agaaaatgcaattgcctcatttctggtataagcaaccgatgatgtttccgtcacccatttgggtggcgatgttaaactctctggcgagaagcgagctttc 11079668  T
Q  111 attgtatta 119  Q
    |||||||||    
T  11079667 attgtatta 11079659  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 1652961 - 1652868
Alignment:
Q  11 agaatatgcaacggcctcatttctggtataagcaaccgatgatggaaacgtcacccatttaggtggcgatgttaaactctctggcgagaagcga 104  Q
    |||| |||| || |||||| ||||| |||||||||| ||||||||||| |||| |||||| |||||| |||||||||| |||||||||||||||    
T  1652961 agaaaatgccactgcctcagttctgttataagcaactgatgatggaaatgtcatccatttcggtggcaatgttaaactgtctggcgagaagcga 1652868  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 1741337 - 1741244
Alignment:
Q  11 agaatatgcaacggcctcatttctggtataagcaaccgatgatggaaacgtcacccatttaggtggcgatgttaaactctctggcgagaagcga 104  Q
    |||| |||| || |||||| ||||| |||||||||| ||||||||||| |||| |||||| |||||| |||||||||| |||||||||||||||    
T  1741337 agaaaatgccactgcctcagttctgttataagcaactgatgatggaaatgtcatccatttcggtggcaatgttaaactgtctggcgagaagcga 1741244  T

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