View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_2 (Length: 726)
Name: NF18065_low_2
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 520; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 24 - 704
Target Start/End: Complemental strand, 34437837 - 34437154
Alignment:
| Q |
24 |
attattggaattttgagcttattgaatgatttagtaacaacgtgtcaaattaaatttgtattagtattaatatgttttctcttagattactatagcatgc |
123 |
Q |
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| T |
34437837 |
attattggaattttgagtttattgaatgatttagtaacaacgtgtcaaattaaatttgtattagtattaatatgttttctcttagattactatagcatgc |
34437738 |
T |
|
| Q |
124 |
ttaataagccagaaaatgttatacatacctggaaatctaaaaaaggctggtttcaactgcattatcatttcaaccaagtcgcttcggaaaccatgtccct |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437737 |
ttaataagccagaaaatgttatacatacctggaaatctaaaaaaggctggtttcaactgcattatcatttcaaccaagtcgcttcggaaaccatgtccct |
34437638 |
T |
|
| Q |
224 |
atttataccaaggcaaatttgaaattaaaatgagcattgccaatagtttctgattaattattaaagagtatagtagtgatactagttagaaaagtgaaat |
323 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34437637 |
atttataccaaggcaaatttgaaattaaaataagcattgccaatagtttctgattaaatattaaagagtatagtagtgataccagttagaaaagtgaaat |
34437538 |
T |
|
| Q |
324 |
agtttctgatattcaactcatataccttatatgtgtcttgaggcatagcagatacttggtctaaccatatggttccttttttcgttgttcttaaggtaag |
423 |
Q |
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| T |
34437537 |
agtttctaatattcaactcatataccttatatgtgtcttgaggcatagctgatacttggtctaaccatatggttccttttttcgttgttcttaaggtaag |
34437438 |
T |
|
| Q |
424 |
acttgcatttgaacttgatgcactggctgttattatggtctcgannnnnnnccactttgcaacctttttattacgtctgcaaaatcaatatttttgttaa |
523 |
Q |
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| T |
34437437 |
acttgcatttgaacttgatgcactggctgttattatggtctccatttttttccactttgcaacctttttattacgtctgcaaaatcaatttttttgttaa |
34437338 |
T |
|
| Q |
524 |
cgacaaaattttattaataatcaagtctttgcacaaga-gaaataagaccgacaaaatataaacaacattgaaaaaggttttgtatatagatggaat--t |
620 |
Q |
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|||||||||||||||| ||| ||| ||||||||||||| ||| || ||| || |||||||||||||| ||| || ||||||||| |||||| |
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| T |
34437337 |
cgacaaaattttattactaaccaaatctttgcacaagacgaacagaggccggcagaatataaacaacatcacaaagagtggtgtatataggtggaatacg |
34437238 |
T |
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| Q |
621 |
cacaaaagaaaagacaattattatttctatggtcatatatctctcaaggatatagtgctcactttatgatttggctagaaccca |
704 |
Q |
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|| |||| |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34437237 |
cagaaaaaaaaagacaattattatgtctatgatcatatatctctctaggatatagtgctcactttatgatttggctagaaccca |
34437154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 136 - 704
Target Start/End: Complemental strand, 34448554 - 34447994
Alignment:
| Q |
136 |
aaaatgttatacatacctggaaatctaaaaaaggctggtttcaactgcattatcatttcaaccaagtcgcttcggaaaccatgtccctatttataccaag |
235 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||| |||| ||||||||||||||| || |
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| T |
34448554 |
aaaatgttatgcatacctggaaatctaagaaaggctggtttcaacttttgaaccatttcaaccaagtcggttcgaaaaccatgtccctat-------aa- |
34448463 |
T |
|
| Q |
236 |
gcaaatttgaaattaaaatgagcattgccaatagtttctgattaatta---ttaaagagtatagtagtgatactagttagaaaagtgaaatagtttctga |
332 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||| | | ||||||||| ||||| || ||||||||||||| |||||||| | | |
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| T |
34448462 |
-caaatttgaaataaaaatgagcattgccaatagtttatgattaaaaaacctaaaagagtat-gtagtagtagtagttagaaaagtttaatagtttttta |
34448365 |
T |
|
| Q |
333 |
tattcaactcatataccttatatgtgtcttgaggcatagcagatacttggtctaaccatatggttccttttttcgttgttcttaaggtaagacttgcatt |
432 |
Q |
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| T |
34448364 |
tattcaactcttataccttatatgtgtcttgaggcatagcagatacttggtctaaccatatggttccttttttagttgttcttaaggtaatacctgcatt |
34448265 |
T |
|
| Q |
433 |
tgaacttgatgcactggctgttattatggtctcgannnnnnnccactttgcaacctttttattacgtctgcaaaatcaatatttttgttaacgacaaaat |
532 |
Q |
| |
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|| ||||||||||||||||||||||||| |||| | |||||||||| ||||||||||| |||||||||||||||||||| |||| |||||||| |
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| T |
34448264 |
tggacttgatgcactggctgttattatgctctcaatttttttccactttgcaccctttttattaggtctgcaaaatcaatatttt--ttaaagacaaaat |
34448167 |
T |
|
| Q |
533 |
tttattaataatcaagtctttgcacaagagaaata-agaccgacaaaatataaacaacattgaaaaaggttttgtatatagatggaattcacaaaagaaa |
631 |
Q |
| |
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||||||||||||||| ||||||||||||| |||| ||| | |||| | | |||||| |||| |||| | |||||||||| |||| ||||||||| |
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| T |
34448166 |
tttattaataatcaaatctttgcacaagacgaatagagaactacaagacagaaacaatattgcaaaaagcgttgtatataggcggaacatgcaaaagaaa |
34448067 |
T |
|
| Q |
632 |
agacaattattatttctatggtcatatatctctcaaggatatagtgctcactttatgatttggctagaaccca |
704 |
Q |
| |
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||||||||||||||||||| |||||||| |||| ||||||| || ||||||||||||| ||||||||||||| |
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| T |
34448066 |
agacaattattatttctataatcatatatatctctaggatatggtactcactttatgatatggctagaaccca |
34447994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 34464875 - 34464785
Alignment:
| Q |
136 |
aaaatgttatacatacctggaaatctaaaaaaggctggtttcaactgcattatcatttcaaccaagtcgcttcggaaaccatgtccctatt |
226 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||| || | ||| ||||||||||| | ||||||||||||||||||| |
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| T |
34464875 |
aaaatgttatgcatacctggaaatctaagaaaggctggtttcaactgaatcaacatctcaaccaagtccttccggaaaccatgtccctatt |
34464785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 347 - 464
Target Start/End: Complemental strand, 34464661 - 34464544
Alignment:
| Q |
347 |
accttatatgtgtcttgaggcatagcagatacttggtctaaccatatggttccttttttcgttgttcttaaggtaagacttgcatttgaacttgatgcac |
446 |
Q |
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|||||| ||||||| ||||||||||||||||||||| ||||||| ||||| | ||| |||||| |||||||||| ||| ||||||||||||||| | |
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| T |
34464661 |
accttaaatgtgtcggtaggcatagcagatacttggtccaaccatactgttccctctttagttgttgttaaggtaaggtttgaatttgaacttgatgctc |
34464562 |
T |
|
| Q |
447 |
tggctgttattatggtct |
464 |
Q |
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||||| || |||||||| |
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| T |
34464561 |
tggcttctaatatggtct |
34464544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 568
Target Start/End: Complemental strand, 49282563 - 49282507
Alignment:
| Q |
511 |
atatttttgttaacgacaaaattttattaataatcaagtctttgcacaagagaaataa |
568 |
Q |
| |
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|||||||| |||||| |||||||| |||||||| ||||||| ||||||||| |||||| |
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| T |
49282563 |
atattttttttaacggcaaaattt-attaataaacaagtctctgcacaagacaaataa |
49282507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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