View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18065_low_20 (Length: 340)

Name: NF18065_low_20
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18065_low_20
NF18065_low_20
[»] chr2 (4 HSPs)
chr2 (1-322)||(44233417-44233738)
chr2 (5-322)||(44222601-44222916)
chr2 (1-322)||(44210396-44210716)
chr2 (158-322)||(43456922-43457086)
[»] chr4 (7 HSPs)
chr4 (158-319)||(2887424-2887585)
chr4 (158-319)||(2896769-2896930)
chr4 (158-319)||(2877901-2878062)
chr4 (157-301)||(46452240-46452384)
chr4 (160-277)||(53668549-53668666)
chr4 (251-319)||(51049647-51049715)
chr4 (6-48)||(2887667-2887709)
[»] chr7 (12 HSPs)
chr7 (159-322)||(39547078-39547241)
chr7 (159-322)||(39339080-39339243)
chr7 (159-322)||(39537613-39537776)
chr7 (158-320)||(39574322-39574484)
chr7 (159-323)||(39366502-39366666)
chr7 (159-323)||(39563709-39563873)
chr7 (159-322)||(39353923-39354086)
chr7 (159-321)||(1084415-1084577)
chr7 (158-322)||(39588790-39588954)
chr7 (160-277)||(42132579-42132696)
chr7 (160-277)||(42141748-42141865)
chr7 (160-277)||(42153550-42153667)
[»] chr8 (2 HSPs)
chr8 (157-322)||(4501700-4501865)
chr8 (160-277)||(31383044-31383161)
[»] chr1 (5 HSPs)
chr1 (158-319)||(2160222-2160383)
chr1 (158-319)||(2148394-2148555)
chr1 (157-304)||(41687149-41687296)
chr1 (158-304)||(19543235-19543381)
chr1 (161-277)||(25986625-25986741)
[»] chr3 (3 HSPs)
chr3 (159-319)||(49773583-49773743)
chr3 (159-265)||(25522821-25522927)
chr3 (160-277)||(12717006-12717123)
[»] scaffold0210 (1 HSPs)
scaffold0210 (160-277)||(8802-8919)
[»] chr6 (1 HSPs)
chr6 (160-265)||(10901718-10901823)
[»] chr5 (1 HSPs)
chr5 (162-307)||(29777441-29777586)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 44233417 - 44233738
Alignment:
Q  1 ccaatggtccaacatatatttcttgtcctccacgtttcataaggaatagctagaaatgcatatgtataatatgtcagattcaagtctaatgaagaggaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44233417 ccaatggtccaacatatatttcttgtcctccacgtttcataaggaatagctagaaatgcatatgtataatatgtcagattcaagtctaatgaagaggaaa 44233516  T
Q  101 agaactaaaaaaggcagattcatttgtcattaatattttttatgacaattcactacatacctcatcaaatgcttcaaatatgtcaatgctaggctgatgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44233517 agaactaaaaaaggcagattcatttgtcattaatattttttatgaccattcactacatacctcatcaaatgcttcaaatatgtcaatgctaggctgatgg 44233616  T
Q  201 atggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaattgcagcagctctagcatctaaaccagaagtaggctcatcca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44233617 atggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaattgcagcagctctagcatctaaaccagaagtaggctcatcca 44233716  T
Q  301 taaaaattatagatggattagc 322  Q
    ||||||||||||||||||||||    
T  44233717 taaaaattatagatggattagc 44233738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 322
Target Start/End: Original strand, 44222601 - 44222916
Alignment:
Q  5 tggtccaacatatatttcttgtcctccacgtttcataaggaatagctagaaatgcatatgtataatatgtcagattcaagtctaatgaagaggaaaagaa 104  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||||||    
T  44222601 tggtccaacatatatttcttgtcctccacgcttcataaggaatagctagaagtgcatatggataat--gtcagattcaagtctaatgaagaggaaaagaa 44222698  T
Q  105 ctaaaaaaggcagattcatttgtcattaatattttttatgacaattcactacatacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatgg 204  Q
    ||| |||||| || ||||||||||||| |||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44222699 ctataaaaggaagcttcatttgtcattgatatttattatgattattcactacatacctcatcaaatgcttcaaatatgtcaatgctaggttgatggatgg 44222798  T
Q  205 tacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaattgcagcagctctagcatctaaaccagaagtaggctcatccataaa 304  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  44222799 tacacacaactgttcttcccgtgtccactgtgttccttacagttcgcataacaattgcagccgctctagcatctaaaccagaagtaggctcatccatgaa 44222898  T
Q  305 aattatagatggattagc 322  Q
    ||||||||||||||||||    
T  44222899 aattatagatggattagc 44222916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 44210396 - 44210716
Alignment:
Q  1 ccaatggtccaacatatatttcttgtcctccacgtttcataaggaatagctagaaatgcatatgtataatatgtcagattcaagtctaatgaagaggaaa 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||| ||||||    
T  44210396 ccaatggtccaacatatatttcctgtcctccacgtttcataaggaataactagaaatgcataaagataatatgtcagattcaagtctaatgaaaaggaaa 44210495  T
Q  101 agaactaaaaaaggcagattcatttgtcattaatattttttatgacaattcactacatacctcatcaaatgcttcaaatatgtcaatgctaggctgatgg 200  Q
    ||||| | |||||| || ||||||| |||||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44210496 agaacaataaaaggaagcttcatttatcattagt-tttatcatgacaattcactacatacctcatcaaatgcttcaaatatgtcaatgctaggttgatgg 44210594  T
Q  201 atggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaattgcagcagctctagcatctaaaccagaagtaggctcatcca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  44210595 atggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaattgcagcagctctagcatctaaaccagaagttggttcatcca 44210694  T
Q  301 taaaaattatagatggattagc 322  Q
    | |||||||| || ||||||||    
T  44210695 tgaaaattatggacggattagc 44210716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 322
Target Start/End: Original strand, 43456922 - 43457086
Alignment:
Q  158 tacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataaca 257  Q
    |||||| || || |||||||| || || || |||||||| || || || || |||||||||||||| ||||| || ||||| || || || |||||||||    
T  43456922 tacctcgtcgaaggcttcaaagatatcgatactaggctggtgaattgtgcagacaactgttcttccagtgtcaacagtgtttctcactgtcctcataaca 43457021  T
Q  258 attgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagc 322  Q
    ||||| |||||||| ||||| | ||| ||||| || |||||||| ||||| || || ||||||||    
T  43457022 attgctgcagctcttgcatcaagacctgaagttggttcatccatgaaaatgattgaaggattagc 43457086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 158 - 319
Target Start/End: Complemental strand, 2887585 - 2887424
Alignment:
Q  158 tacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataaca 257  Q
    |||||||||||| ||||| ||||||||||| || || ||||| ||||| || |||||||||||||||||||| || |||||||| || |||| |||||||    
T  2887585 tacctcatcaaaagcttcgaatatgtcaatacttggttgatgaatggtgcaaacaactgttcttcctgtgtcaaccgtgttcctaacggttcgcataaca 2887486  T
Q  258 attgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggatt 319  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||    
T  2887485 attgcagcagctctagcatctaatccagatgtaggctcatccatgaaaattatggatggatt 2887424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 158 - 319
Target Start/End: Original strand, 2896769 - 2896930
Alignment:
Q  158 tacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataaca 257  Q
    |||||||||||| ||||| ||||||||||| || || ||||| ||||| || |||||||||||||||||||| || |||||||| || |||| |||||||    
T  2896769 tacctcatcaaaagcttcgaatatgtcaatacttggttgatgaatggtgcaaacaactgttcttcctgtgtcaaccgtgttcctaactgttcgcataaca 2896868  T
Q  258 attgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggatt 319  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||    
T  2896869 attgcagcagctctagcatctaatccagatgtaggctcatccatgaaaattatggatggatt 2896930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 158 - 319
Target Start/End: Complemental strand, 2878062 - 2877901
Alignment:
Q  158 tacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataaca 257  Q
    |||||||||||| | |||||||||||| || || || ||||| |||||||| |||||||||||||||||||| || |||||||| || |||| |||||||    
T  2878062 tacctcatcaaaagattcaaatatgtcgatacttggttgatgaatggtacaaacaactgttcttcctgtgtcaaccgtgttcctaacggttcgcataaca 2877963  T
Q  258 attgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggatt 319  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||||||    
T  2877962 attgcagcagctctagcatctaatccagatgtaggctcgtccatgaaaattatggatggatt 2877901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 301
Target Start/End: Complemental strand, 46452384 - 46452240
Alignment:
Q  157 atacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataac 256  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||||| || ||||  ||||  || || |  ||  | ||||| ||||||||||| ||    
T  46452384 atacctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcac 46452285  T
Q  257 aattgcagcagctctagcatctaaaccagaagtaggctcatccat 301  Q
    ||| || ||||| |||||||| || || || || |||||||||||    
T  46452284 aatggctgcagccctagcatccaatccggacgtgggctcatccat 46452240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 53668549 - 53668666
Alignment:
Q  160 cctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaat 259  Q
    |||||||||| |||| ||| || |||||||| || || || || || |||||||| ||||| | |||||| |||||||| || ||||||| ||| |||||    
T  53668549 cctcatcaaaagcttaaaaaatatcaatgcttggttggtgaattgtgcacacaaccgttctccatgtgtctactgtgtttctcacagttcgcatcacaat 53668648  T
Q  260 tgcagcagctctagcatc 277  Q
     ||||| |||||||||||    
T  53668649 agcagcggctctagcatc 53668666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 51049715 - 51049647
Alignment:
Q  251 cataacaattgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggatt 319  Q
    |||||| | ||||||||||| |||||| ||||| || ||||| ||||||||||||||||| ||||||||    
T  51049715 cataactactgcagcagctcgagcatccaaacctgatgtaggttcatccataaaaattatcgatggatt 51049647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 2887709 - 2887667
Alignment:
Q  6 ggtccaacatatatttcttgtcctccacgtttcataaggaata 48  Q
    ||||||||||||||||||| |||||| |||||||| |||||||    
T  2887709 ggtccaacatatatttcttctcctccgcgtttcatgaggaata 2887667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 159 - 322
Target Start/End: Original strand, 39547078 - 39547241
Alignment:
Q  159 acctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa 258  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| || |||||||||||||    
T  39547078 acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccggtgtctactgtgttcctaactgttctcataacaa 39547177  T
Q  259 ttgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagc 322  Q
    | || |||||||| ||||| |  |||||||| ||||||||||| || |||||||| ||||||||    
T  39547178 tagctgcagctcttgcatcaagtccagaagttggctcatccatgaatattatagaaggattagc 39547241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 159 - 322
Target Start/End: Complemental strand, 39339243 - 39339080
Alignment:
Q  159 acctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa 258  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| || |||||||||||||    
T  39339243 acctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcataacaa 39339144  T
Q  259 ttgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagc 322  Q
    | || ||||| || |||||||  |||||||| ||||||||||| || ||||| || ||||||||    
T  39339143 tagctgcagcccttgcatctagcccagaagttggctcatccatgaatattattgaaggattagc 39339080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 159 - 322
Target Start/End: Original strand, 39537613 - 39537776
Alignment:
Q  159 acctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa 258  Q
    ||||||||||| | ||||||||| ||||||||||| || || |||||||| |||||||||||||| ||||| ||||||||||| || |||||||||||||    
T  39537613 acctcatcaaaagattcaaatatatcaatgctaggttggtgaatggtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcataacaa 39537712  T
Q  259 ttgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagc 322  Q
    | || ||||| || ||||| |  |||||||| ||||||||||| || |||||||| ||||||||    
T  39537713 tagctgcagcccttgcatcaagtccagaagttggctcatccatgaatattatagaaggattagc 39537776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 158 - 320
Target Start/End: Original strand, 39574322 - 39574484
Alignment:
Q  158 tacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataaca 257  Q
    ||||||||| || | |||||| || |||||||| ||||| || ||||||||||||| ||||||||| ||||||||| ||||||| || | ||||||||||    
T  39574322 tacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccagtgtccactatgttcctaactgctctcataaca 39574421  T
Q  258 attgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggatta 320  Q
    || || |||||||| |||||||| |||||||| ||||||||||| || || ||||| ||||||    
T  39574422 atagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggatta 39574484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 159 - 323
Target Start/End: Complemental strand, 39366666 - 39366502
Alignment:
Q  159 acctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa 258  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| || | |||||| || |    
T  39366666 acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaacagttcttccggtgtcaactgtgttcctaactgctctcatcacta 39366567  T
Q  259 ttgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagct 323  Q
    | || ||||| || |||||||  |||||||| ||||||||||| || ||||| || |||||||||    
T  39366566 tagctgcagccctcgcatctagcccagaagttggctcatccatgaatattattgaaggattagct 39366502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 159 - 323
Target Start/End: Original strand, 39563709 - 39563873
Alignment:
Q  159 acctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa 258  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||  ||||||||||| || |||||||| ||||    
T  39563709 acctcatcaaaagattcaaatatatcaatgctaggctggtggatagtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa 39563808  T
Q  259 ttgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagct 323  Q
    | || ||||| || |||||||  |||||||| || |||||||| || ||||| || |||||||||    
T  39563809 tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagct 39563873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 159 - 322
Target Start/End: Complemental strand, 39354086 - 39353923
Alignment:
Q  159 acctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa 258  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| || |||||||| || || |||||||| ||||    
T  39354086 acctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttcctgtatctactgtgtttctaactgttctcatcacaa 39353987  T
Q  259 ttgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagc 322  Q
     ||| ||||| || |||||||  |||||||| || |||||||| || ||||| || ||||||||    
T  39353986 ctgctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagc 39353923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 321
Target Start/End: Original strand, 1084415 - 1084577
Alignment:
Q  159 acctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa 258  Q
    ||||||||||| | ||||||||| ||||| || || ||||||||||| || ||||| |||||||| ||||| |||||| |||| || |||||||||||||    
T  1084415 acctcatcaaaagattcaaatatatcaatacttggttgatggatggtgcaaacaacagttcttccagtgtctactgtgctcctaactgttctcataacaa 1084514  T
Q  259 ttgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattag 321  Q
    | || || ||  | |||||||  |||||||| |||||||||||||| |||||||| |||||||    
T  1084515 tcgctgctgccattgcatctagcccagaagttggctcatccataaatattatagaaggattag 1084577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 158 - 322
Target Start/End: Original strand, 39588790 - 39588954
Alignment:
Q  158 tacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataaca 257  Q
    |||||| ||||| | ||||||||| | |||||| |||||||| |||||||| |||| ||||||||||||||||||| |||| || || | ||||||||||    
T  39588790 tacctcgtcaaaagattcaaatatatgaatgctgggctgatgaatggtacaaacaattgttcttcctgtgtccactatgtttctaactgctctcataaca 39588889  T
Q  258 attgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagc 322  Q
    || |  ||||| || |||||||  || ||||| ||||||||||| || |||||||| ||||||||    
T  39588890 atagatgcagcccttgcatctagccccgaagttggctcatccatgaatattatagaaggattagc 39588954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 42132579 - 42132696
Alignment:
Q  160 cctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaat 259  Q
    |||||||||| |||||||| || |||||||| || || || || || |||||||| ||||| |||||||| |||||||| || ||||||| ||| |||||    
T  42132579 cctcatcaaaagcttcaaaaatatcaatgcttggttggtgaattgtgcacacaacagttctccctgtgtctactgtgtttctcacagttcgcatcacaat 42132678  T
Q  260 tgcagcagctctagcatc 277  Q
     ||||| |||||||||||    
T  42132679 ggcagcggctctagcatc 42132696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 42141748 - 42141865
Alignment:
Q  160 cctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaat 259  Q
    |||||||||| |||||||| ||||| || || || ||||| || || || ||||| ||||| ||||| |||||||| || || || || | |||||| ||    
T  42141748 cctcatcaaaagcttcaaaaatgtctatacttggttgatgaattgtgcaaacaacagttctccctgtatccactgtatttctcacggtccgcataacgat 42141847  T
Q  260 tgcagcagctctagcatc 277  Q
    |||||| |||||||||||    
T  42141848 tgcagcggctctagcatc 42141865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 42153550 - 42153667
Alignment:
Q  160 cctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaat 259  Q
    |||||||||| |||||||| ||||| || || || ||||| || || || ||||| ||||| ||||| || ||||| || || || |||| |||||| ||    
T  42153550 cctcatcaaaagcttcaaaaatgtctatacttggttgatgaattgtgcaaacaacagttctccctgtatctactgtatttctcacggttcgcataacgat 42153649  T
Q  260 tgcagcagctctagcatc 277  Q
    |||||| |||||||||||    
T  42153650 tgcagcggctctagcatc 42153667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 157 - 322
Target Start/End: Complemental strand, 4501865 - 4501700
Alignment:
Q  157 atacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataac 256  Q
    ||||||||||||| |||||||| || ||||||||||| ||||| || || ||||||||||||||||| || || || ||||| |||||||| ||||||||    
T  4501865 atacctcatcaaaggcttcaaagatatcaatgctaggttgatgaattgtgcacacaactgttcttccagtatcaacagtgtttcttacagtcctcataac 4501766  T
Q  257 aattgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagc 322  Q
    ||| ||||| ||||| ||||||| ||||||||| ||||||||||| || || || || ||||||||    
T  4501765 aatagcagctgctcttgcatctagaccagaagttggctcatccatgaatatgattgaaggattagc 4501700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 31383044 - 31383161
Alignment:
Q  160 cctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaat 259  Q
    |||||||||| |||| ||| || |||||| | || || || || || |||||||  |||||||||||||| | |||||| || | ||||| ||| |||||    
T  31383044 cctcatcaaaagcttaaaaaatatcaatgtttggttggtgaattgtgcacacaatagttcttcctgtgtctattgtgtttctcatagttcgcatcacaat 31383143  T
Q  260 tgcagcagctctagcatc 277  Q
     |||||| ||||||||||    
T  31383144 agcagcaactctagcatc 31383161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 158 - 319
Target Start/End: Original strand, 2160222 - 2160383
Alignment:
Q  158 tacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataaca 257  Q
    |||||||||||| || || ||||||||||| || ||||||||||| || || ||||| || | ||||||||| ||||||||||| || |||||||| |||    
T  2160222 tacctcatcaaaggcgtcgaatatgtcaatacttggctgatggattgtgcaaacaacagtacgtcctgtgtcaactgtgttcctcactgttctcattaca 2160321  T
Q  258 attgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggatt 319  Q
    |||||||| ||||||||||| |  ||||| || ||||||||||| || ||||| ||||||||    
T  2160322 attgcagctgctctagcatcaaggccagaggttggctcatccatgaatattatcgatggatt 2160383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 158 - 319
Target Start/End: Original strand, 2148394 - 2148555
Alignment:
Q  158 tacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataaca 257  Q
    |||||||||||| |  |||||||||||||| || ||||||||||| || ||||| || || | |||||||||||| ||||||||||| |||| ||| |||    
T  2148394 tacctcatcaaaggaatcaaatatgtcaatactcggctgatggatcgtgcacaccacggtacgtcctgtgtccacagtgttccttactgttcgcattaca 2148493  T
Q  258 attgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggatt 319  Q
    || ||||| |||| |||||| |  ||||| || || |||||||| || ||||| ||||||||    
T  2148494 atcgcagctgctcgagcatccaggccagaggttggttcatccatgaatattatcgatggatt 2148555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 304
Target Start/End: Original strand, 41687149 - 41687296
Alignment:
Q  157 atacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataac 256  Q
    ||||||||||||| | ||||||||| |||||||| || || || || || || || || ||||| ||||| ||| |||| || || ||||| | ||||||    
T  41687149 atacctcatcaaaagattcaaatatatcaatgcttggttggtgaattgtgcagaccacagttctccctgtatccgctgtatttctgacagtacgcataac 41687248  T
Q  257 aattgcagcagctctagcatctaaaccagaagtaggctcatccataaa 304  Q
    |||||| |||||||| ||||| |  || || |||||||||||||||||    
T  41687249 aattgctgcagctctggcatcaaggcctgatgtaggctcatccataaa 41687296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 304
Target Start/End: Complemental strand, 19543381 - 19543235
Alignment:
Q  158 tacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataaca 257  Q
    ||||||||||||   |||||| || ||||| || || ||||| || || |||||||| ||||| ||||| || |||||||| || ||||| | ||||||     
T  19543381 tacctcatcaaaattttcaaaaatatcaatacttggttgatgaattgtgcacacaacagttctccctgtatcaactgtgtttctaacagtacgcataact 19543282  T
Q  258 attgcagcagctctagcatctaaaccagaagtaggctcatccataaa 304  Q
    | ||| |||||||||||||| | |||||  || || |||||||||||    
T  19543281 actgctgcagctctagcatcaagaccagtcgttggttcatccataaa 19543235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 25986625 - 25986741
Alignment:
Q  161 ctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaatt 260  Q
    ||||||||| |||| ||| || |||||||| || || || || || |||||||| ||||| |||||||| || ||||| || ||||||| |||  ||||     
T  25986625 ctcatcaaaagcttaaaaaatatcaatgcttggttggtgaattgtgcacacaacagttctccctgtgtctaccgtgtttctcacagttcgcatctcaata 25986724  T
Q  261 gcagcagctctagcatc 277  Q
    ||||| |||||||||||    
T  25986725 gcagcggctctagcatc 25986741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 159 - 319
Target Start/End: Complemental strand, 49773743 - 49773583
Alignment:
Q  159 acctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa 258  Q
    ||||||||||| || |||||||| ||||| ||||||||||| || || || ||||| ||||| |||||||||||||| ||||| || |||||||| || |    
T  49773743 acctcatcaaaagcatcaaatatatcaatactaggctgatgaattgtgcagacaacagttctccctgtgtccactgtattcctcactgttctcattacta 49773644  T
Q  259 ttgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggatt 319  Q
    | ||||||||||| ||||| |  ||||| ||||| |||||||| || || |||||||||||    
T  49773643 tagcagcagctcttgcatcaaggccagaggtaggttcatccatgaatataatagatggatt 49773583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 25522821 - 25522927
Alignment:
Q  159 acctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa 258  Q
    ||||||||||||||||||||||| ||||| || |||||||| |||||||| || || |||||||| || || || || || |  ||||||||||||||||    
T  25522821 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcaacagtattgcgaacagttctcataacaa 25522920  T
Q  259 ttgcagc 265  Q
    | |||||    
T  25522921 tggcagc 25522927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 12717006 - 12717123
Alignment:
Q  160 cctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaat 259  Q
    |||||||||| |||| ||| || |||||||| || || || || || |||||||| ||||| |||||||| |||||||| || ||||||| ||| |||||    
T  12717006 cctcatcaaaagcttaaaaaatatcaatgcttggttggtgaattgtgcacacaacagttctccctgtgtctactgtgtttctcacagttcacatcacaat 12717105  T
Q  260 tgcagcagctctagcatc 277  Q
     ||||| |||||||||||    
T  12717106 agcagcggctctagcatc 12717123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 8919 - 8802
Alignment:
Q  160 cctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaat 259  Q
    |||||||||| |||| ||| || ||||| || || || || || || ||||||||  |||| |||||||| |||||||| || ||||||| ||| |||||    
T  8919 cctcatcaaaagcttaaaaaatatcaatacttggttggtgaattgtgcacacaacatttctccctgtgtctactgtgtttctcacagttcgcatcacaat 8820  T
Q  260 tgcagcagctctagcatc 277  Q
     |||||||||||||||||    
T  8819 agcagcagctctagcatc 8802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 265
Target Start/End: Original strand, 10901718 - 10901823
Alignment:
Q  160 cctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaat 259  Q
    |||||||||| |||| ||| || |||||||| || || || || || |||||||| |||||||||||||| |||||||| || ||||||| ||| |||||    
T  10901718 cctcatcaaaagcttaaaaaatatcaatgcttggttggtgaattgtgcacacaacagttcttcctgtgtctactgtgtttctcacagttcacatcacaat 10901817  T
Q  260 tgcagc 265  Q
     |||||    
T  10901818 agcagc 10901823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 307
Target Start/End: Complemental strand, 29777586 - 29777441
Alignment:
Q  162 tcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaattg 261  Q
    ||||||||||||||||| || ||||| || || ||||| |||||||| ||||| |||||||| || || || ||||| |  ||||||| |||||| || |    
T  29777586 tcatcaaatgcttcaaaaatatcaatacttggttgatgtatggtacagacaacagttcttccagtatcaacagtgttgcgaacagttcgcataacgatag 29777487  T
Q  262 cagcagctctagcatctaaaccagaagtaggctcatccataaaaat 307  Q
    | || || | |||||| |  ||||| |||||||| |||||||||||    
T  29777486 ctgcggcacgagcatcaagtccagatgtaggctcgtccataaaaat 29777441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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